barSeed - Barley Seed Development Database

Probe CUST_36748_PI390587928

Source Contig U35_25546

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36748_PI390587928	Hv_44K_v2	GGAAATGTTACTCTGTTTTGAGTATCTGCCCAATGGAAGCCTTGATAAATATCTATCTGA	973	GeneList: skyblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.602	0.726	2.518	2.574	1.239	0.947
Raw	12.582	22.570	72.473	109.447	20.375	16.933

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70652.1	2060	2e-24	1120 - 1179	100	60 / 60	plus	ABC38300
MLOC	MLOC_70652.2	2418	2e-24	1120 - 1179	100	60 / 60	plus	ABC38300
MLOC	MLOC_70652.3	2019	2e-24	1120 - 1179	100	60 / 60	plus	ABC38300
JLOC1	JLOC1_46897.3	1760	8e-25	791 - 850	100	60 / 60	plus
JLOC1	JLOC1_46897.2	1953	8e-25	1025 - 1084	100	60 / 60	plus
JLOC1	JLOC1_46897.1	1994	8e-25	1025 - 1084	100	60 / 60	plus
Harvest21	ABC23197	1036	3e-25	974 - 1033	100	60 / 60	plus
Harvest35	U35_25546	1036	3e-25	974 - 1033	100	60 / 60	plus

Contig Sequence (1036 bp)

>U35_25546 1036 Hv_44K_v2
GGATCATCCAGTCTCTCCGATCAAACTTCCACCTACCGCCAGATTCCTCCTACCGACCAC
TGGATCACCGTCTCTTCCAGCGGCCGCTCGCTCTACTGCACTGAACCCGACTGGCGCCGG
CGCATCCGGGCTCAAGATCTGATCGACCGAATCTACTTTGCTGCCGTGCTGGAACTGGAA
GTGGTGGTGCTGGTGCTGGTGCAGTAGCAGGGGATCGGATGTGCAGACCAGGAACCTCGT
CGACAGTGGACACGGGATGTTCCGCGATCGGGGTTTTCTTCTCGTGCAGCTCGCTCCTCC
CGACGCCGTCGGACCGTTGGGCCGAGCTCTGGTCGGAGGACATGGACGAGGATGGGGAGG
AGATGCTGCGCATGACGATGATGATCAACAGTGTAACACCAATTGATGGCTCCGTGGATG
TTCCTGTGGACAAGGGCCGTTGCTCGCCGGTGCGTACGCCGACGAGGCCCTCTCACTCCG
CCCGTGACCCACATGGTATCCTCGTAGACAAGTTCAGTGCCCATGACCATGAGAGACGAC
CGGGCACCGCAGAGAAAGACGAGATTGGCAATGACAATCACGATGGCTACACTGCCGCAA
CCACAAAGCATTCTGCCCACATGGTAATGTGCTCTCCAGGCTTGGATGCCATACTCCGTG
AGGAGAGTTCGAGACCACACGATATACCACTGCAACATTTGAAAGAGATCACGGATAACT
TTTCCGACAAGCGAATACTTGGAAAAGGTGGTGTCGGTGTGGTATACCAGGGAGTGCTGC
CAAATGGAGAAATGATTGCCGTGAAGAGGATAATCTCGCCATTCATGCCAGGCCCGCAGA
AGCAATTCAACAGCGAGGTGTGCCATCTTATGTTGCTTAAGCACCCCAATATAGTGACAT
TTGTAGGCTACTGCTGCGAAACAAAGAATGAATGCGTAGAGCATGATGGGAAATACGTTC
TCGCGGAGTTAGTGGAAATGTTACTCTGTTTTGAGTATCTGCCCAATGGAAGCCTTGATA
AATATCTATCTGATGA

Homology of Contig U35_25546 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None