barSeed - Barley Seed Development Database

Probe CUST_3673_PI390587928

Source Contig U35_5277

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3673_PI390587928	Hv_44K_v2	GAATTCTTGAAGCAAGAGAATGAAGTTGGTAATATTACCAGGCAGGAGGCTGTCAGCATG	590	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63540.3	4481	2e-24	1577 - 1636	100	60 / 60	plus	ABC18411 ABC40085
MLOC	MLOC_63540.2	3191	2e-24	2493 - 2552	100	60 / 60	minus	ABC18411 ABC40085
MLOC	MLOC_63540.1	3169	2e-24	2456 - 2515	100	60 / 60	minus	ABC18411 ABC40085
JLOC1	JLOC1_41629.1	3141	8e-25	649 - 708	100	60 / 60	plus
Harvest21	ABC27957	613	3e-25	554 - 613	100	60 / 60	plus
Harvest35	U35_5277	650	3e-25	591 - 650	100	60 / 60	plus

Contig Sequence (650 bp)

>U35_5277 650 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGATCACCAACAAACCTGCAGGCGCTCCAACTCCTGCCACC
GCCACCGCCACCGCCAACTCCCTCCGCGCCGCCTCTGACGGGTCGCCGCAGCTGCGGAGC
GCGCGCTAGAGGGAGAGATGGGGGGCGGCAGGAAGCGCGGGCGCTCGCAGCGTCGTCACT
TCAAGCAGGAGCGCGAGAACGTCTGGAAGGACAACCCCAGGCGCCCTCCCGCCTCCGCCG
GCGAAGGAGGCGAGGGCAACGGCTGGCAGCCCTTCGCCACGGAGAACCTGGCCTTCGAGG
CTTACTACAAGGGGCAGCAAATTGTTCCTGAGGAAGAGTGGGATGCCTTCATGAGCATGC
TCCGGAAGCCATTGCCAGCCGCTTTTAGGATTAATGCGAGCTGTCAGTTTTTTAAAGACA
TTTGTTCACAATTAGAAAATGACTTCAGGAAGTCGTTAGAGACTGAGGTCAGTGATGACC
ATGAAAAAGAGGCTATTCGGCCTTTGCCTTGGTACCCTGGCAATCTTGCATGGCATTTGA
ACTTTTCTCGGATGCAACTGAGGAGAAACCAGGCACTTGAGAGTTTCCATGAATTCTTGA
AGCAAGAGAATGAAGTTGGTAATATTACCAGGCAGGAGGCTGTCAGCATG

Homology of Contig U35_5277 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g29630.1	881	1e-89	protein\|NOL1/NOP2/sun family protein, putative, expressed
Brachypodium v1_2	Bradi4g32840.1	881	6e-93
Arabidopsis v10	AT2G22400.1	808	6e-58	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr2:9504823-9508788 REVERSE LENGTH=808