barSeed - Barley Seed Development Database

Probe CUST_36736_PI390587928

Source Contig U35_7516

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36736_PI390587928	Hv_44K_v2	ATTCTTTGGGAGAATATTGTCTCCTCCTGTTAAATAAACTCGGTGTTGGTTGCTAAAAAA	1369	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	11.710	3.517	1.054	0.993	0.552	0.769
Raw	409.318	200.108	50.507	72.890	14.944	22.804

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC20328	749	3e-25	679 - 738	100	60 / 60	plus	ABC20328
Harvest35	U35_7516	1440	3e-25	1370 - 1429	100	60 / 60	plus

Contig Sequence (1440 bp)

>U35_7516 1440 Hv_44K_v2
GGCGAATTGGGCCCTTTCGAAGATGCTCGAGCGGCCGCTCACAACACAGGCAGAATACTG
TTATACGGTCGAGTATCCATGATTGACAGAGAAGTTGACTGAATAGCTAGCAGCATAAAG
TTAGGTACAACATGACTTTAATCAAGCACCAACAGCATATCAAAACTTACCCAGATAACT
GTTGCTCATATTCAAAATCTAACTCCACTATCGTTATCAGAAAGATGGACAAGTCTGAGG
CTTCAATACGCAAACATTTAGAGCCCGTCTGCCAATGACTCCGGGAACAAAGGAACATAT
GGAAGATAAGGGAACATTGAACTCGATCCAAGGTCACGAATGAAACGCAGCTCCCTAGAA
TCCATGTGGTATGAAAATAATTTCATCTGTGATAAGAGCTCCGATGCAAATCTTACGGTT
ATGAATATGACATTGTGTTCTGGGTGGGCTGAGATAACACGGTAATATTCCCTGGCGCTT
GAATACTCTACTCCGACCAGTTGCAGGTAGCTGAGTTTGAGCTTCAGTGTCCAACAATTT
TCACTACTAGAATCTTGAAGAAGCCAGATTGACAGCGGCCGCTGGTACAACTTCCACATC
TGTGATCAAGGCGAGATTCAAGTCTTTCAACAAGCAATTTGAAGAGGTTTGTCAGACTCA
GATGAACTGGGCTATTCCCGACAAGGAGTTACGTGATAACCTTATCCTTGCAGTTGCTGA
AATTCTGTTACCTGCTTATAGATCTTTTCTGAAACGCTTTGGGCCTCTTGTTGAGAACAG
CCATCATGCTTCGAAATATATGAAGTACACTCCAGAAGCACTTGAGCAAGCACTTGGTAA
TCTATTTGCAAAGAAGTTACCACAATAGGTGAACTGGGACACTGATTGCACCATGCATTA
TATTTAACAGAATCTTCATTCAAATAGGAACTAGGGGGATGTTGTCTGTGGACTCGGTCG
ATCAGGAAGTCATTTTCTGTGCTGTTGAGTTGAGCAGGTCATCAACCTATCGAAGCCAAC
CAAATCTCAATCCAGCGTTATCGCAAGGCTTGCTGTGCTCCAGCAATCGTGTTACGGGAA
GCGTCACATATAAATCTGCATTCAATTCTGGATCTAGACGTTGACAGCAGAGCTATCAAA
ATCAGTGTGTGGGTCTAGCGACGCACGATGTTTTTGGTTATACTCAGAAAGTAGATATAT
CAGATAGGGATTTGCTGGAAAAAGGGTGATAGATATCTCACTGGTCGTTTCGTGGTAACA
TCGCCGCAGCTAATCATGGACTAGGTCTCAGAGCTATCATGGTGTCATGGGTGGAATCTA
AACAAAGTTTTGCTTTTTCTGTTTTCTTGCCATGGTAGAACATGTTTTTATTCTTTGGGA
GAATATTGTCTCCTCCTGTTAAATAAACTCGGTGTTGGTTGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_7516 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None