barSeed - Barley Seed Development Database

Probe CUST_36733_PI390587928

Source Contig U35_7519

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36733_PI390587928	Hv_44K_v2	ATTGTTTGAATTGTTGCCTTACATGTTAAGTGCTTGGTGGAATGAAATCCCTGAATTCCA	829	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.953	1.521	1.140	0.652	0.235	0.193
Raw	3633.340	4326.413	2916.490	2580.323	335.273	296.867

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14915.2	2936	2e-24	2865 - 2924	100	60 / 60	plus	ABC17394
JLOC1	JLOC1_10193.1	2536	8e-25	2386 - 2445	100	60 / 60	plus
Harvest21	ABC17394	913	3e-25	830 - 889	100	60 / 60	plus	ABC17394
Harvest35	U35_7519	913	3e-25	830 - 889	100	60 / 60	plus

Contig Sequence (913 bp)

>U35_7519 913 Hv_44K_v2
TCCCCCGGGCTGCAGGAAGACAGAGGACCTCCACTAGAAGTTTTGCTAGAGTTGCGAAAG
GAGGGCAGCAAATTTATGGAGAACGAGGGATCTGTTGTTGCATTAAATGAGCTGGAGATA
TTATTCAAAGCTCTAGAAAAAGCAAATGCCCTTGACAGGATAAGTTTTGATTTAAGCCTT
GCTAGAGGCCTTGATTACTACACAGGTGTGATATATGAAGCTGTGTTCAAGGGAGTCACA
CAGGTTGGCTCTATTGCTGCTGGTGGCAGGTACGACAAGCTTGTCGGCATGTTCAGCAAC
AAGCAAGTCCCTGCTGTTGGCGTCAGCCTTGGAATAGAAAGAGTCTTTGCAATCATGGAG
CAACAGGAGAAGGAAAAGAACCAGGTGATCCGGGCGACCGAGACGGAGGTTTTGGTGTCG
ATTCTGGGCAAGGACCTCATATTGGCCGCTGAGCTTGTGAACGAGCTGTGGAGTGCTGGG
ATAAAGGCAGAGTTCAAGCTCACCACCAGGGTGCAGAACCACATAAAGTACGCGACGCAG
ACGGGCATCCCGTGGATGGTGCTGGTCGGCGAGTCCGAGTTGAGGGATGGGAAGGTGAAG
CTGAAGGACATCACGGCTAACCAGGAAGAGGAGGTTCCGAGGAAGGATTTCGTTGAGGTG
CTGAAGCAGAGACTATCTAACCCCTAGAAGGTAAATCTTAGAAAGATGTAGCGTGTGCGT
GAGTACTGGGCGGTATGTGGTTCTTGGTTTTTCTGTGCGGCCATTTTGCTGTTGCTGAGA
TGTGTACACAAGACAGTGCGGCTCCTCGATTTAATACTGATGATCACAAATTGTTTGAAT
TGTTGCCTTACATGTTAAGTGCTTGGTGGAATGAAATCCCTGAATTCCAAACTTAAAAAA
AAAAAAAAAAAAA

Homology of Contig U35_7519 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g05840.1	886	7e-119	protein\|tRNA synthetase class II core domain containing protein, expressed
Brachypodium v1_2	Bradi2g35680.1	892	4e-124
Arabidopsis v10	AT3G02760.1	883	8e-68	Class II aaRS and biotin synthetases superfamily protein \| chr3:597588-600650 REVERSE LENGTH=883