- Probe CUST_36732_PI390587928
- Source Contig U35_7520
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_36732_PI390587928 | Hv_44K_v2 | GAACAGTTCTACCCGGCGATGGTCTACCTCTCCACCTCCAAGATATGCTTCGTGCTGCTC | 443 | GeneList: floralwhite MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.820 | 0.587 | 1.413 | 1.746 | 0.957 | 0.867 |
| Raw | 36.500 | 37.746 | 88.076 | 157.797 | 32.986 | 33.083 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK362478 | 2984 | 2e-24 | 532 - 591 | 100 | 60 / 60 | plus | ABC10871 |
| MLOC | AK249972.1 | 2155 | 2e-24 | 508 - 567 | 100 | 60 / 60 | plus | ABC10871 |
| MLOC | MLOC_37883.1 | 3216 | 7e-23 | 1111 - 1167 | 100 | 57 / 57 | minus | ABC10871 |
| JLOC1 | JLOC1_24575.1 | 2348 | 4e-23 | 1182 - 1238 | 100 | 57 / 57 | plus | |
| Harvest35 | U35_7520 | 530 | 3e-25 | 444 - 503 | 100 | 60 / 60 | plus |
Contig Sequence (530 bp)
>U35_7520 530 Hv_44K_v2 CTCACATGGTCCTCACAGGGTGAATACCTTGATGCTATCTCCCCTCCTAGAGTTTCTCCC AATCCAACCAATCACAAGGGTACGAAATCCGGATAGGGGCGCGGCCGCATCCCGGGACGA GATTTCACTCCGCCGCCGCCCCCGGCGGTGCTCAGTGTCCGTGCCTACGAGGGAGTGAGG GGGCGCGCAAACCCTCTCGCCGCAAAATCGCCGTGAACGCCAGCAGGAGCCTCCGTTGGA TCAAATCTTCCGACGTGTTCCCCGTCCGATCTCTCCCGGGATCCTCGTATCGGTGATCTA TTGGTTGCGTGCCTTTGGGTTTGTGGCGGAATTCGCGAGGGGATTCGCCGAGGGCGGCGG CCGAGATGATCCGGTTGCAGACGTACGCCGCGTTCAGCCTGCTGGCGACGGTAACGTCGG TGTACTATGCGTTCAGCAGCAGGGAACAGTTCTACCCGGCGATGGTCTACCTCTCCACCT CCAAGATATGCTTCGTGCTGCTCCTCACACGGGCCTCGTCGCCTGTGCCT
Homology of Contig U35_7520 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |