barSeed - Barley Seed Development Database

Probe CUST_36731_PI390587928

Source Contig U35_7521

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36731_PI390587928	Hv_44K_v2	CTGAGTGTCAAAATGTCTTTACTGACTATGTAAAGTTAAGCTTTATATCTGAGTGCCAGA	269	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.042	1.665	1.342	0.788	0.300	0.302
Raw	1099.921	1442.224	993.462	913.992	122.434	136.580

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52269.1	1093	2e-24	993 - 1052	100	60 / 60	plus	ABC17940
JLOC1	JLOC1_33476.1	1240	8e-25	1008 - 1067	100	60 / 60	plus
Harvest21	ABC17940	197	3e-25	113 - 172	100	60 / 60	plus	ABC17940
Harvest35	U35_7521	354	3e-25	270 - 329	100	60 / 60	plus

Contig Sequence (354 bp)

>U35_7521 354 Hv_44K_v2
CTTGCTCACCACTTCATCCAAAGGACATAGCATTATCCTCATTAACTGATCCTAGGATTG
CAGTGGGTGCCAGATAGGCCTAACTTTACAGACATGGTGTTCTTACAAAATGGACAGCGT
AGCTTGTGTATCTCCCCGGCGTTCCGGATTATGGACTGTGTCAGGCAAAGTCAGATTATT
TGTGGTAGCCTGTAACTTGCTATGTGTAACGGCTGCCGCCCAGTATTTGGTTGGTGTAAC
TCGTACTGAGTTGTTGTTAGCTTTAGTTTCTGAGTGTCAAAATGTCTTTACTGACTATGT
AAAGTTAAGCTTTATATCTGAGTGCCAGATTGAATTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_7521 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None