barSeed - Barley Seed Development Database

Probe CUST_36725_PI390587928

Source Contig U35_7528

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36725_PI390587928	Hv_44K_v2	GCATCGCGCAATCAGTTATTGCTGGAATGGATATGATTATGATTCCTCACAGATTTGAGA	468	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.126	0.116	0.808	2.742	1.629	1.905
Raw	10.809	15.170	98.259	522.613	111.665	140.869

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58487.2	2369	2e-24	1079 - 1138	100	60 / 60	minus	ABC12842
MLOC	MLOC_58487.3	2159	2e-24	956 - 1015	100	60 / 60	minus	ABC12842
MLOC	MLOC_58487.1	2260	2e-24	1100 - 1159	100	60 / 60	minus	ABC12842
JLOC1	JLOC1_38004.2	2330	8e-25	1133 - 1192	100	60 / 60	plus
Harvest21	ABC18392	701	3e-25	469 - 528	100	60 / 60	plus
Harvest35	U35_7528	700	3e-25	469 - 528	100	60 / 60	plus

Contig Sequence (700 bp)

>U35_7528 700 Hv_44K_v2
TCGCCGTTTGTAGGGATCCGAGGTGGGGGAGATGCTACGAGAGCTACAGCGAGGACCCGG
AGATCGTGCGCTCGTTGACCACAATTGTTACCGGCCTGCAGGGCCAGCCACCAGCAGATC
ACCCCCACGGTCAACCGTTCCTCGCTTCGGTTAGGGACAATGTGCTTGCTTGTGCCAAGC
ATTTCGTAGGGGATGGTGGCACTGCCAAGGGAATCAATGAGGGGAACACCATTTGCTCGC
CAGAAGATTTGGAGAGGATCCACATGACACCATACCCTGATTGTATGACTCAAGGGGTGG
CAACAGTCATGGCGTCCTACTCTCAGTGGAATGGAGAACCATTACATTCCAGCCACCATT
TGCTCACAGATGTTCTAAAGGGCAAGTTAGGCTTCGAGGGGTTTGTGGTGTCAGACTGGG
AAGGTATTGACAGGCTCTGTGAGCCTCGAGGGTCTGATTATCGATATTGCATCGCGCAAT
CAGTTATTGCTGGAATGGATATGATTATGATTCCTCACAGATTTGAGAAATTCTTGGAAG
ATCTTGTGTCCTTGGTGGAGACAGGGGAGATACCAATATCACGGATTGATGATGCTGTTG
AGCGGATTCTGAGGGTTAAGTTCATATCTGGAGTGTTTGAGCATCCATTTTCAGATCCAT
CTCTACTAGACGTGGTTGGTTGTAAGGAGCATCGGCTGCT

Homology of Contig U35_7528 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g37700.1	607	4e-148	protein\|periplasmic beta-glucosidase precursor, putative, expressed
Brachypodium v1_2	Bradi2g23720.1	621	9e-155
Arabidopsis v10	AT3G47000.1	608	8e-113	Glycosyl hydrolase family protein \| chr3:17313811-17316539 REVERSE LENGTH=608