barSeed - Barley Seed Development Database

Probe CUST_36724_PI390587928

Source Contig U35_7529

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36724_PI390587928	Hv_44K_v2	CAAATTACATTTTGCGTGTACATTCATCCATGACATCCAACATGAATCCGTTATACTGTA	440	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.931	3.534	4.887	2.265	0.557	0.511
Raw	11.455	76.863	82.064	61.749	2.926	4.032

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC22198	519	3e-25	444 - 503	100	60 / 60	plus	ABC22198
Harvest35	U35_7529	516	3e-25	441 - 500	100	60 / 60	plus

Contig Sequence (516 bp)

>U35_7529 516 Hv_44K_v2
GCGATGCCGGCGTACTGGGTGCCGATGCACTACCTGTCGCTCTTCAAGTGGCCGTTCGAG
GCGCTGCTGCTGAACGAGTTCGGGGGCCGGTGCGCGGCGAGGGCGATGGGGGTGTGCGTG
GCGACCGGCGACGAGGTGCTCCGGCGGGAGGGGATCGGGGAGGAGTGCCGGTGGAGGAAC
GTGGCCGTCATGGTGGGGTTCGTCGCCTTGTACCGGGTGCTCGGCTACGCCGTGCTCCGG
GTCCGCTGCAGCCTCACGCTCAGGGCCGCCGCACGATCCGCATTGATGCTCACATCCTCC
TCACACCACTCTGCTTGCTTCTCTGCATCTTCTACTTCTACGAGTAGTACCAAAGCCTGA
ATCCCTTTCTTGCACATGTTCCATAAATCTTGATGTGATTTTGGTTGTAAATTATGGGAC
AGCTATGATGAGTAAAGGGACAAATTACATTTTGCGTGTACATTCATCCATGACATCCAA
CATGAATCCGTTATACTGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_7529 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None