barSeed - Barley Seed Development Database

Probe CUST_36718_PI390587928

Source Contig U35_7535

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36718_PI390587928	Hv_44K_v2	TAGCGCTTGATGTGGAATTTCTGTCTTCGCATTTCCTTGGTCTATGTCTCATTTTGGGTT	685	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.508	1.375	1.174	0.784	0.289	0.296
Raw	2426.343	3457.690	2575.370	2674.948	349.699	390.307

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37340.1	2901	2e-24	2803 - 2862	100	60 / 60	plus	ABC19026
MLOC	MLOC_37340.3	2142	2e-24	1904 - 1963	100	60 / 60	plus	ABC19026
JLOC1	JLOC1_24174.3	2353	8e-25	2076 - 2135	100	60 / 60	plus
JLOC1	JLOC1_24174.2	3073	8e-25	2796 - 2855	100	60 / 60	plus
JLOC1	JLOC1_24174.1	2188	8e-25	1911 - 1970	100	60 / 60	plus
Harvest35	U35_7535	762	3e-25	686 - 745	100	60 / 60	plus

Contig Sequence (762 bp)

>U35_7535 762 Hv_44K_v2
TGTTGCCCATGTTGTGAACTTTGATCTCCCCAATGATATTGATGACTATGTACACAGGAT
TGGTCGTACAGGGAGGGCAGGAAAAAGTGGAATTGCGACTGCTTTCTTCAATGACAACAA
CTCTTCAATGGCAAAGTCTCTAGCTGACTTAATGCAAGAATCTAATCAGGAGGTACCTGC
GTGGCTCACTCGCTATGCAGCTCGCCCATCTTATGGTGGTGGTGGTGGAAAGAACAGACG
TGGTGCCGGAGGAGGGAGCCGCTTTGGTGGCCGTGACTTCCGTAGGGAATCTTCTTCCTT
TGGCAAGGGTGGTGGCGCCAGTGACTATGCTGGAGGCAGCAGCTATGGGGGCGGTGGCTA
TGGTGGTGCTGGAGCTCCCAGTGCCTGGGATTAATGTTGCAGTCGTTCCTGTAGGGTCTA
TCAAGTTTAGTTTGCTTTACTCTAGCTTCTTATTAGATATACATTTTTGGTAGGAGCAGA
TATACAGCGACAGCACTAGTGAACTGTGTCGGACCCCTTCTTTTCTTCTGGTTACAACCG
AAGTAATCTTATCTTACAGATATCTGTTATGGAGAGCGTCTTTGAGGACTTTCAGGCACA
CACCAAGGTTCGCAGCTAGGAATATGATTTCTAGACTGAATTACTTGTTAGGGATAATAG
TAGCTGGTGTTGGTAGACTGACATTTAGCGCTTGATGTGGAATTTCTGTCTTCGCATTTC
CTTGGTCTATGTCTCATTTTGGGTTGGTNNAAAAAAAAAAAA

Homology of Contig U35_7535 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None