barSeed - Barley Seed Development Database

Probe CUST_36716_PI390587928

Source Contig U35_7537

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36716_PI390587928	Hv_44K_v2	AAGCATATGCATTATTATATGTACATCAGAAACTAATTCGTTGCAACCAGAGGAATGCCA	801	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69556.2	3691	2e-24	2811 - 2870	100	60 / 60	minus	ABC16107
MLOC	MLOC_69556.1	4753	2e-24	3780 - 3839	100	60 / 60	minus	ABC16107
MLOC	MLOC_69555.2	3919	2e-24	1472 - 1531	100	60 / 60	minus	ABC16107
JLOC1	JLOC1_46092.2	3634	8e-25	883 - 942	100	60 / 60	plus
JLOC1	JLOC1_46092.1	3298	8e-25	547 - 606	100	60 / 60	plus
JLOC1	JLOC1_46091.3	2468	8e-25	1451 - 1510	100	60 / 60	minus
Harvest21	ABC16107	880	3e-25	802 - 861	100	60 / 60	plus	ABC16107
Harvest35	U35_7537	880	3e-25	802 - 861	100	60 / 60	plus

Contig Sequence (880 bp)

>U35_7537 880 Hv_44K_v2
GGTTTGTTTGGCATGGCGCACAAGGCCCCACTCATGACAGTAGAACTAATGACAGGAGAG
AATCTTAAATCCCCTCCCTCCCCTCCCTGCCTGACCAGATTTGATACATGCCAACCTGTT
GCTTCTTAACAGAACCAAAAAGGTTTGGACCTTGGCCTAGAAGTAGCTAGCAAGAGAGAT
CTTCTTGGGGGAGAAAAGAGAGAGAGTGCCTTACCTTGTTCACAAGAGAAGAATTCAGAA
ACAGGACTCCTTGGCAGAGGTGAAGCTGATATTTCGTGTGGGTTGGTGAGAGATGGAGAA
GAAACATATGAAGATGGCCATCCTGAGGCAAGAGCACATATTCAGACAACAGGTTCACGA
GCTGCATCGCGTATACGAGGTTCAGAAGCGACTGATGAAGGAGATGCAGGCTGTTAAGAT
GAGCCCAGCTCAGGCAAGAGAAGATACTCAAACAGAACAGATGCTGGATACAGATCGACC
ACAATGGTACGTCGACTCGGGCGAGAAGACCGCTCCTTTCATCGAGGACTTCAACCTGGA
GCTGACACTGGCAACTGGGGGTGACACGAGGAAGCAAGAGATGACATCCAACTCTGAGTC
TGGAGGAACAGTGACATCATCGACTTCTGCTGAATCAGAGTCAGGGCAGCAGCGATTCCC
CGAGTCCAGTGTAAACCTGAGGTTTCAACATGAGAGCAAGAGGCATGATGATCAGCTCAC
GCAGTCTCCTTGGCTCTACCAATGTTTAAGTTTGAAGATGGCTTGATGGCTTAGCTACGG
GTGGCTTGAGTGTCTACACAGAAGCATATGCATTATTATATGTACATCAGAAACTAATTC
GTTGCAACCAGAGGAATGCCATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_7537 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g32360.1	156	2e-52	protein\|expressed protein
Brachypodium v1_2	Bradi4g06640.2	157	2e-58
Arabidopsis v10	None