barSeed - Barley Seed Development Database

Probe CUST_36715_PI390587928

Source Contig U35_7538

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36715_PI390587928	Hv_44K_v2	CCCACTAACATGCTTGTATTCTGTATTATGGCATGTCACGAGATTTTAATGTTTGAAATG	501	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.222	1.212	1.084	1.000	0.396	0.381
Raw	1391.487	2185.815	1685.937	2432.112	342.539	357.592

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369516	3408	2e-24	3341 - 3400	100	60 / 60	plus	ABC19280 ABC38826
MLOC	MLOC_11170.1	1505	2e-24	80 - 139	100	60 / 60	minus	ABC19280
JLOC1	JLOC1_7376.1	943	8e-25	61 - 120	100	60 / 60	minus
JLOC1	JLOC1_7375.1	559	8e-25	412 - 471	100	60 / 60	plus
Harvest21	ABC19280	587	3e-25	43 - 102	100	60 / 60	minus	ABC19280
Harvest35	U35_7538	603	3e-25	502 - 561	100	60 / 60	plus

Contig Sequence (603 bp)

>U35_7538 603 Hv_44K_v2
ATTGCAGCTGAGCCAAAACATGGTGAGAGATGGCAAGCTATAAGCAAGGCCGTTGAGAAC
TCACATCTGCCAGTTGATGCCATCCTGAGGAAAGTCGTTCTGGCTCTTGGTGCAGAAGAA
AATCCCAATGCTGCAGAACCCTAGTCCTTACTGTTTTGATAAGGTCATCCAAATATCGGG
CTGAAGAGTTATAGATGACGGGCCGCTGAGATAAATGCTTGGAGTAGTTTGTTCATGATG
CCCTAAGCCCCCCTGACTGATGATTGTATCATGCATGCCTGGTGGAGACCCCAAAATCAT
TCATACCAAGCAAGCGGTGTTGATACCCATTTTAGTTTACTAGTCGTTGAGTGAGCTGGT
GATCTCATATGTGCACTGCAAGACTTGTGGAACCCCTCTGCTGTCATGAACAAGGCTGAG
TGATATCGGTTCAGCTGGCTTTTGGTGTCGTCATGTACCCGAAGGAAAGCTCCTTGTTGT
AGCTCATAAGAGTTAATGATACCCACTAACATGCTTGTATTCTGTATTATGGCATGTCAC
GAGATTTTAATGTTTGAAATGCGTTTATGAAGTGATCTGTTCGTTAAAAAAAAAAAAAAA
AAA

Homology of Contig U35_7538 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None