barSeed - Barley Seed Development Database

Probe CUST_36709_PI390587928

Source Contig U35_7544

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36709_PI390587928	Hv_44K_v2	ATGTACCCTTCATCAGATCATTCGGTGATGATCCCAGTCTTTGATCTACTCCCTCAGGTT	748	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.307	1.077	1.162	1.043	0.338	0.359
Raw	39.434	49.311	48.167	71.523	6.960	9.050

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64437.3	2624	2e-24	1385 - 1444	100	60 / 60	plus	ABC13806
MLOC	MLOC_64437.2	2132	2e-24	837 - 896	100	60 / 60	plus	ABC13806
MLOC	MLOC_64437.1	2391	2e-24	1068 - 1127	100	60 / 60	plus	ABC13806
JLOC1	JLOC1_42312.1	2131	8e-25	826 - 885	100	60 / 60	plus
Harvest21	ABC19326	1112	3e-25	1002 - 1061	100	60 / 60	plus
Harvest35	U35_7544	859	3e-25	749 - 808	100	60 / 60	plus

Contig Sequence (859 bp)

>U35_7544 859 Hv_44K_v2
GGCGACGGGAGCCACCACGCCATTACTTCGGCGCCCCGCCCCGCCCTCCTCCAACCGCCA
CCTCCCTCCGCGATCTCGCCGCGCGATCTCCGACCGCCCAGCCGCCCACCGAGCCCCCGC
GGGAGGAGCCTCGAGCCGTCGCCCCGGGCGTCCCATGGTGGGGCCAGCACATCGGGGCCG
CGAGATCTAGGGTTTTCGCGCCGCGGCGGGAGCGATGGGGCGCCGGAAGGCCACGGCGCC
GGGGCCGGCCCGGGGCTCTTCGAGGGCCGGGGACGGCGTAATCTCCGAAATCCGTGAGAA
ACATAAATTGGAACTGGAGAATTTGACACTAACAAAGCACCCATTCAAGACATTGCACTT
TTTCATGTTAGCTATGTTGCAATACTTGAAAAGATCAGCAGCATATATCCTGAGTAAAGG
TGCTTTGTTTGTTGTCCTAATTGTTTTGGTGGTAATTCCTGGAGTTGCACTTCTGGTTAC
GGATGGTCTGCACAAAAAGCACGTGCAGGAGTTCCTTAATTATGCTAGATTTGTGTTGTG
GTGGGTTTCATTAGGCGTGGCCTCGTCAATCGGACTAGGTTCAGGTTTGCATACATTTGT
GCTGTATCTTGGGCCCCACATTGCTCTCTTCACTATTAAGGCCGTTCAATGCGGTCGTGT
CGATTTGAAGACCGCTCCATATGATACCATACTGCTTAAACAGGCGCCATCATGGCTTGA
CAAGAAGTGTTCGGAATTTGGATCGCCGATGTACCCTTCATCAGATCATTCGGTGATGAT
CCCAGTCTTTGATCTACTCCCTCAGGTTCAGTTGGAAGCTGTTCTTTGGGGTATCGGGAC
AGCACTTGGCGAGCTCCCT

Homology of Contig U35_7544 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g57066.1	439	4e-112	protein\|transmembrane protein 49, putative, expressed
Brachypodium v1_2	Bradi2g51700.1	440	2e-118
Arabidopsis v10	AT4G14950.1	416	9e-77	SNARE associated Golgi protein family \| chr4:8545517-8547722 FORWARD LENGTH=416