barSeed - Barley Seed Development Database

Probe CUST_36705_PI390587928

Source Contig U35_7549

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36705_PI390587928	Hv_44K_v2	CATTTTACGACGCATGACCCCCGATTTTAAGATACTGCCCCCAGCTATATGTTTGCTAAA	678	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56326.1	9583	2e-23	7322 - 7379	100	58 / 58	minus	ABC04501 ABC08038 ABC16810 ABC34614
MLOC	MLOC_56325.2	6805	2e-23	4211 - 4268	100	58 / 58	minus	ABC04501 ABC08038 ABC16810 ABC34614
JLOC1	JLOC1_36418.6	2982	1e-23	2263 - 2320	100	58 / 58	plus
JLOC1	JLOC1_36418.5	2720	1e-23	2001 - 2058	100	58 / 58	plus
JLOC1	JLOC1_36418.4	2849	1e-23	2130 - 2187	100	58 / 58	plus
JLOC1	JLOC1_36418.3	2799	1e-23	2080 - 2137	100	58 / 58	plus
JLOC1	JLOC1_36418.2	2683	1e-23	1964 - 2021	100	58 / 58	plus
JLOC1	JLOC1_36418.1	2843	1e-23	2124 - 2181	100	58 / 58	plus
JLOC1	JLOC1_36416.1	4776	1e-23	3796 - 3853	100	58 / 58	minus
Harvest35	U35_7549	752	3e-25	679 - 738	100	60 / 60	plus

Contig Sequence (752 bp)

>U35_7549 752 Hv_44K_v2
AGCAGCAATGCAAGCATATTCTAGAATCTTGGTACGATATGCTGACCTTGAAGGAAAATA
TATTCTTGATGGGGTTGAGGGCCAGCTGAAGGATACATCTGAAGCTCCTGGTGAATTGCT
AGTACGACTGAAGGAGGCTGAGGAAGCGACAAGAGTTGCTGAGGAAGCGACAAGAGTTGC
CGAGCGCCGTGCCTTGTTGGCAGAGCAGAAGATGGACATGCTGATTGAGGAAAACGTTGC
GCTCAATCAACGGCTGACAGAGAAGTAGAAGCACAGTTCGCTGGAGGTGACGAAGAGCAC
AAACCTCCACTTGCGGCTCTCCGGTCACGACAGATGCAACATCTGAAGATCGATGCCGGC
ACCATGTAGTGTATACCAGTTTAAAGAGGAAGGAATGAGCAGTGGCTACAGCTTGAAATA
AGTTGATGATTCCACTCCGCTCTGTATCTGTATGGAGACTCCTAAAAGGATCTTGAGGGA
AAATAGCAACTGCAGTACGCAGATAACAGGCTGCAGTTCTCTTCTACCTTTTGCCCTTGT
CCTTGACTTAGCAGTTTACTGTTGGCTTTGCTTTGGTACAGGAATATTAGCTATAGTCTC
ACTTCTGCTGTAGATAAGTGTTGAAAATACATTGGGCACACTTACTGTAAATTTTTGTAG
AGAGTGAATTGGTGTATCCATTTTACGACGCATGACCCCCGATTTTAAGATACTGCCCCC
AGCTATATGTTTGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_7549 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None