barSeed - Barley Seed Development Database

Probe CUST_36704_PI390587928

Source Contig U35_7550

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36704_PI390587928	Hv_44K_v2	CTGTCATTACTCCATATGCTCAATTCCTATTTAGATTCCTCTCAGATGCAGCAGAAAAAA	956	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.740	1.597	1.115	0.773	0.519	0.556
Raw	543.273	692.507	472.064	454.111	120.598	142.276

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36393.4	1795	2e-24	642 - 701	100	60 / 60	minus	ABC12117
MLOC	MLOC_36393.3	2266	2e-24	1113 - 1172	100	60 / 60	minus	ABC12117
MLOC	MLOC_36393.2	2467	2e-24	1210 - 1269	100	60 / 60	minus	ABC12117
MLOC	MLOC_36393.1	2487	2e-24	1429 - 1488	100	60 / 60	minus	ABC12117
JLOC1	JLOC1_23424.4	2499	8e-25	1014 - 1073	100	60 / 60	plus
JLOC1	JLOC1_23424.3	2391	8e-25	1006 - 1065	100	60 / 60	plus
JLOC1	JLOC1_23424.2	2452	8e-25	974 - 1033	100	60 / 60	plus
JLOC1	JLOC1_23424.1	2451	8e-25	974 - 1033	100	60 / 60	plus
Harvest21	ABC16414	1008	3e-25	918 - 977	100	60 / 60	plus
Harvest35	U35_7550	1047	3e-25	957 - 1016	100	60 / 60	plus

Contig Sequence (1047 bp)

>U35_7550 1047 Hv_44K_v2
CCCCCTNGAACCCAAACAAACCCTAGCTCACCATCCCGATCCCAAGAACCCACCTTCGCC
ATGGACGACTCCAGCGACGGCGGAGCCACCGCCGGCAGCACAAAGAAGAAGTCTGCTGCT
GCGGCCGCCAAGGGGAAGGCGACGGGAAAAGGGAAGGCCGCCTCCAAGGCGGCGCCCAAG
TCCAAGGAGAGCAGCCTCCTAAAGCAGAAATCGCCCGCAGAGTTCTTTGCGGAAAACAAG
AACATCGCTGGTTTTGACAATCCTGGAAAATCTTTGTACACCACAATGCGGGAGCTAGTT
GAGAATGCTCTTGATTCAGCCGAGTCCATCTCTGAGCTCCCCGATATAGAAATTACTATA
AGAGATCACTAAGAGCAAATTCAACACAATGATAGGACTAGTTGATCGAGAACGCGTTGA
TGAAGCACTCTATGATGATTTTGAATCATCTAAGGCTCGTGAGAAACGCCTAGCTAAAGA
AGCACGTTTCCAAGAAACACAAGCCAAAAATGCTGCTCTAGGGAAGAAAGTTAAGGACAC
CCCAGCTGCTCGTGGAAAAGGTCGGGGCGAGGCTTCATTTTTCAGAGTGACTTGCAAGGA
TAATGGCCGAGGTATGCCGCATGAAGATATCCCAAATATGTTTGGGAGAGTGCTATCGGG
AACAAAATATGGTTTGAGGCAGACGCGTGGAAAATTTGGACTTGGTGCTAAAATGGCACT
TATTTGGTCAAAGATGAGTACGGGCCTTCCTATTGATATTAAGTCATCGATGAAAGGCCA
AGATTATATTACGTTCTGTCGACTTGACATAGATATTCATAAAAATGTCCCTCATATTCA
TTTACATGAGAAACGTGAGAATAATGGCCATTGGCATGGGGCAGAGATTCAAGTTATTAT
TGAGGGAAACTGGACAACTCATCGGTCAAGGATATTACATTACATGCGACAGATGGCTGT
CATTACTCCATATGCTCAATTCCTATTTAGATTCCTCTCAGATGCAGCAGAAAAAAATTT
GACGATAAAATTTGCAAGAAGGACAGA

Homology of Contig U35_7550 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g10770.1	697	2e-142	protein\|OsTOP6B - Topoisomerase 6 subunit B, expressed
Brachypodium v1_2	Bradi4g27057.1	689	8e-146
Arabidopsis v10	AT3G20780.1	670	5e-125	\| Symbols: ATTOP6B, BIN3, HYP6, RHL3, TOP6B \| topoisomerase 6 subunit B \| chr3:7264025-7268498 REVERSE LENGTH=670