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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_36703_PI390587928Hv_44K_v2GTTAAAACCCCTTACGTTCACTCCAATATATGGGTCTCGTTTCTGTTTCATGCCAAAAAA576GeneList: brown
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.8682.0771.2120.6440.1570.199
Raw 155.141263.178137.828121.9469.36713.802



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_65709.310379e-22823 - 87710055 / 55plus ABC16311
MLOCMLOC_65709.411749e-22149 - 20310055 / 55minus ABC16311
MLOCMLOC_65709.110869e-22185 - 23910055 / 55minus ABC16311
MLOCMLOC_65709.211199e-22185 - 23910055 / 55minus ABC16311
JLOC1JLOC1_43255.17085e-22516 - 57010055 / 55plus
Harvest21ABC163116473e-25577 - 63610060 / 60plusABC16311
Harvest35U35_75516473e-25577 - 63610060 / 60plus



Contig Sequence (647 bp)

>U35_7551 647 Hv_44K_v2
AGGGTTCGCCTGTCCCACCGGCCTCCGTGTCCACCGTCGGCGACCTGAGGAGCCTCGCCG
CTTCGAGCCTCGACTCGCTCAAGCGCCGCCTCGACGCGCTCCACGGCGACTCCGCCCGTG
ACCTCCAGGCCTCCCACTCCCGAATCTCCAAGCGCATCAAGATGCAGACGCAGAGCTGCC
TGCAGATGGCGGAGGAGGCGGAGAAGGAGCATAAGAAGATGGCCGAGAAGATCTCCGAGC
GCGCCGAGGAGATGGAGGCATCGTACAAGAAGTTCGTGACGGAGGTGCAGTCGTCTTCGT
GTCGTGTGTCCAAGGTGACCTTCCCTGAGATGGCAAAGTCCGTGACCAGAGCTATCGACG
GCTTGCGCAGTCGCTACAACATCCCAGCTACGACAGCTTAGCATACAGTTCAGTTCAGGC
TGTGTCTGCTACCTCTCTGAGTTGGTACATTCCCTTCTCCAGATCAAACCTGGCTGCTGA
ATTCCTGGACCCGTGGCAGCAGAAAACTCACGCGTTTGTAATATAACTGCTACATTTACA
TCGCACACTTTTTGCTACAGTCTCTTCGTCAGCAACGTTAAAACCCCTTACGTTCACTCC
AATATATGGGTCTCGTTTCTGTTTCATGCCAAAAAAAAAAAAAAAAA



Homology of Contig U35_7551 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None