- Probe CUST_36701_PI390587928
- Source Contig U35_7553
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_36701_PI390587928 | Hv_44K_v2 | CTCTGCTTGATTTCTGTCCTTGCTGTTTGTTAATTTCGCTTTGATGCAAAATAAGAAAAG | 477 | GeneList: saddlebrown MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.054 | 0.137 | 0.978 | 2.031 | 1.296 | 1.981 |
Raw | 342.248 | 1359.759 | 9733.113 | 29095.100 | 7248.363 | 11895.593 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_43222.1 | 2203 | 2e-24 | 1905 - 1964 | 100 | 60 / 60 | minus | ABC15346 |
JLOC1 | JLOC1_27932.1 | 770 | 8e-25 | 514 - 573 | 100 | 60 / 60 | minus | |
Harvest21 | ABC15346 | 572 | 3e-25 | 478 - 537 | 100 | 60 / 60 | plus | ABC15346 |
Harvest35 | U35_7553 | 572 | 3e-25 | 478 - 537 | 100 | 60 / 60 | plus |
Contig Sequence (572 bp)
>U35_7553 572 Hv_44K_v2 TCCAAACGGAACGCAGGACGAAGCTGCGAGCCGTGGCATGTCATAGCAACGGCCGGGGAC GAGGAGAAGAATGGGGGAGGGCGCGCCATGCAGCCTCATGCCACGGCGCCGGGGGCTAGT GCGGTGGCGCGGCCTCGGCCTCGGCCGGCGCCGTAAGCTCCACGTCGCCCGGCTCGGCGG CGGCGGCGGCAGCGGCACGGCAGGCGGTGGCCGTGGCCGCGGGCTCCTGCGGCGGCTCCG ACTGCGCTGGCTCCGGCGTGCCGTCCGCAAGCTGGCCGCGATTTACAAGGCGGCGCTGGC AGGGCCGGGGGCACCGTGGGTCGGCGTGGAGCCCTGCTTCGCCACGCCGTTCGTCTTCGT CCCCAACGCCCGGCCCTTCCTGTGATGCCACCGGCCGGCGCAGAGCTTCTAGGCAAGGGG AAACCGATCGATTGCCGGCGGCCGTGATCTCGGCATCATTTCCATGCATGCGCGAAGCTC TGCTTGATTTCTGTCCTTGCTGTTTGTTAATTTCGCTTTGATGCAAAATAAGAAAAGAAA AGGTAAATTCAGTATAAAAAAAAAAAAAAAAA
Homology of Contig U35_7553 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |