barSeed - Barley Seed Development Database

Probe CUST_366_PI390587928

Source Contig U35_9358

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_366_PI390587928	Hv_44K_v2	GCATGGTTCTGAAAGAGTTCCCGTTTCTTGTATCATGAAGCGCATCTGCATTCATTTGGC	510	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.123	1.216	1.358	1.334	0.652	0.603
Raw	238.822	417.671	395.453	638.219	104.292	106.350

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368545	1310	2e-24	1039 - 1098	100	60 / 60	plus	ABC23231
MLOC	AK366620	1121	2e-24	758 - 817	100	60 / 60	plus	ABC23231
MLOC	MLOC_81027.1	888	2e-24	297 - 356	100	60 / 60	minus	ABC23231
JLOC1	JLOC1_53919.1	1022	8e-25	463 - 522	100	60 / 60	plus
Harvest21	ABC23231	894	3e-25	325 - 384	100	60 / 60	minus	ABC23231
Harvest35	U35_9358	894	3e-25	511 - 570	100	60 / 60	plus

Contig Sequence (894 bp)

>U35_9358 894 Hv_44K_v2
GCGGCAGTAAATACGTCGGGCTGGCAGTTTCTGACCGCAAAACAGGATTGCCTTGCCTCT
GAGTGTCTTGGGTAGGACAAAGACAAACATCAATTTGATGGCAGACGATTTCAAAACACT
GGTTAACAATTACTCCCTTGCCGGGCTTGTTGTGGGTTATCCATTCAACTTACAGGGTCA
ATCTTCTCCAGATGCATCACAAGTAAGCCTTCTCGTAGGAGAACTTTGTAAAACTGGGAA
ACTTGATGATTTGAGCTACACATATTGGGATGAAAATTTTACCTCAAAGTGCGTAGAAGC
CCTTTTAAATCCTCTGAACCTAAACGATCGAGTTGAGACGAAAACAATGACAGATAAATT
TGCTGCAGTTTGCATACTCCAGGGTTATTTAGATAACATGAACAGAGCATTGACATCTGC
TGATAATGTGAAGAGTAACTTGAGCTCAGCTTCTGGTCAATGGGCATTTGCCTCTTAAAA
GTTCCTTCCGCCTGTCAGTCTTTCTTGGAAGCATGGTTCTGAAAGAGTTCCCGTTTCTTG
TATCATGAAGCGCATCTGCATTCATTTGGCCGAGGCAGAGCATAACTTGGAGCTGATGCG
CCGTTAGACATATTCCGCTGACGGCACATCACCTGGGCAAAAGCAACTTTCGTACTTGTC
TAAACCGATGCTAATCTATTGGGAAGATCCTTCCTCCCCTTCTTTCCTTGTAGCCTCAGC
CTGCTCATGAGATTCTCGGCATAAGCGTGCACCGCAACAGCTCGGTAATGGCCATTTCTC
GGAAATTGCAAGCCGGTTTCCATGCCCCAGCATATGCCTACTGTACGTCATCACGATGCC
AACAGTGTAATTCCCGAGTCTCGGTACGTTTTCTTGGCTCACGGGCAGCCGGGC

Homology of Contig U35_9358 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g55900.1	179	2e-72	protein\|holliday junction resolvase, putative, expressed
Brachypodium v1_2	Bradi2g50830.4	176	2e-79
Arabidopsis v10	None