barSeed - Barley Seed Development Database

Probe CUST_36699_PI390587928

Source Contig U35_7555

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36699_PI390587928	Hv_44K_v2	AAGGGAAGTTCAAAGATCGAGCAACTTTGCCTGCAAGTTCTTTCAATGCGGATCTGTCCA	810	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67418.4	1092	2e-24	771 - 830	100	60 / 60	minus	ABC18232
MLOC	MLOC_67418.5	3204	2e-24	635 - 694	100	60 / 60	minus	ABC18232
MLOC	MLOC_67418.3	2983	2e-24	807 - 866	100	60 / 60	minus	ABC18232
MLOC	MLOC_67418.2	1297	2e-24	807 - 866	100	60 / 60	minus	ABC18232
MLOC	MLOC_67418.1	3452	2e-24	877 - 936	100	60 / 60	minus	ABC18232
JLOC1	JLOC1_44511.2	3452	8e-25	2517 - 2576	100	60 / 60	plus
JLOC1	JLOC1_44511.1	3076	8e-25	2141 - 2200	100	60 / 60	plus
Harvest21	ABC16578	988	3e-25	811 - 870	100	60 / 60	plus
Harvest35	U35_7555	988	3e-25	811 - 870	100	60 / 60	plus

Contig Sequence (988 bp)

>U35_7555 988 Hv_44K_v2
CTGAAAGATAGCTGGACTTTGGAGTACCTTCAGAGGTTGCAGATCACTGGTTGGCAAAAG
TTATCAAGCTATAATAGGTCCTGCAGATGGGGTATCAGACACAAACCCAAGGAGGCATTT
AAAGAGCTGAAGCTTCAAAAAACCTCAGATGACATGATCGATGAAATATTTTCTACTCCA
AATGAAGATACTTGTGACAATTCAGGTCAAGAAAATGAACCAGATAAACTAGGAAATGAC
ATTGATATGCTTCCAGCCAGCGAGGTGCAATGTCATGTCACACGTAATGATAATTCTCTG
CCAACCAGATTGATAAAGAAAAAGCTTCTGCAGTTTGCCAAAAGTAACAGGCCAGCATAT
TATGGGACTTGGAGGAAGAAAAGTGCGGTAGTTCGTCCAAAGTGTCCACTTTTGATGGAC
CCTGATCTTGATTATGAAATTGACAGTGATGATGAATGGGAGGAGGTGGATCCTGGTGAG
AGCCTTTCTGACTGTGAGAAGGACACTGATGAGGTTATGGATGAAGATTCCAAGATTATA
GATGAAGAAGAGGAAGATAGCTTTGTCGTCCCTGATGGTTACCTCTCGGATAGTGAGGGT
ATTCAGGTAGAAAGTCTATTGGATGAAAATGCTGACGATGCCAGTAGTTCGCCAACCAGC
CAGTGTCCAGAAGTTGAGGAATTCAGAATTTTACTACGCCAGCAAAAAGTGCTTAACACT
TTGACTGAACAGGCTCTTCGCAAGAGTCAACCTCTAGTAATATCCAACCTAGCTCATGAA
AAGGCTGACTTATTGACTGCCCAAGATCTCAAGGGAAGTTCAAAGATCGAGCAACTTTGC
CTGCAAGTTCTTTCAATGCGGATCTGTCCAGGGGGTGGAGTAGTTGATGTGCCAGCCATT
GACAGTTCATCTGCTGCTTCTGAAGAAACCAACCAGTTGAATGCAAAAAGTAGCCCTGCA
GCTGCATCCTCTGTACTGGATACAGACC

Homology of Contig U35_7555 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g67100.1	897	1e-141	protein\|expressed protein
Brachypodium v1_2	Bradi3g36190.1	932	9e-178
Arabidopsis v10	AT1G65470.1	815	5e-62	\| Symbols: FAS1, NFB2 \| chromatin assembly factor-1 (FASCIATA1) (FAS1) \| chr1:24319906-24323879 REVERSE LENGTH=815