barSeed - Barley Seed Development Database

Probe CUST_36697_PI390587928

Source Contig U35_7557

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36697_PI390587928	Hv_44K_v2	GTTTGGAGATTTCTCCCAAAAGTGAAGTGATTGTTTGTTCCCCTACCCGGGCTTGAATTT	315	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.241	1.316	1.241	0.897	0.365	0.351
Raw	618.165	1046.294	861.852	967.565	141.814	146.490

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65738.1	786	2e-24	345 - 404	100	60 / 60	plus	ABC19878
JLOC1	JLOC1_43277.1	740	8e-25	410 - 469	100	60 / 60	plus
Harvest21	ABC19878	538	3e-25	246 - 305	100	60 / 60	minus	ABC19878
Harvest35	U35_7557	620	3e-25	316 - 375	100	60 / 60	plus

Contig Sequence (620 bp)

>U35_7557 620 Hv_44K_v2
GCACGAGGATCACTTATCGAGAAAATAAGACAGCAGCAGAATGGGAGTCTTGTATTCAGA
TAGCATCATTCGATTGATTTTCAATCTGTTTGCCAGGAGACTCCTCAGCTATATGATTTG
AGTATAGGGTAGCTGTATCGGTGGTGTATATAAAGCTACCATTTCTGAGATTAGAAGATG
TATACCGCGGGAACATTTTTACAGACTATATGGCTGCCGTGGCGAAGTTGACTGTTCGCC
GCATGTCATCGGATGCAGAGAAGTATAACCCAAGAGTTCCTCATGAGAAAAAAAAATACA
GGGTTCCATTTGTTCGTTTGGAGATTTCTCCCAAAAGTGAAGTGATTGTTTGTTCCCCTA
CCCGGGCTTGAATTTTTTTAAGGCAATCTGAGTGAGCTAAATAGCCGGGATAGAAAGCGC
GCGCGTGTGTGGGCCGTGTTTTTCCTGACATGAAGTTGTCGCACCGCCTGTTGTCGTGTA
CCAAATTTTGTCGAGCTGCTGCCGTGGTTGGTTTCCACCCCCATTTAGTTAGCTGGGGAT
GCTGTACAGACTCTATGCTGGTGGTGCGTAAGGTTTGGGCTTCTCGAAGCTTGCAAGTTT
AAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_7557 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None