barSeed - Barley Seed Development Database

Probe CUST_36692_PI390587928

Source Contig U35_7563

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36692_PI390587928	Hv_44K_v2	ATCATCGCTTTACTCTCACCGCTCGGAGTCAAAGAAAAGGGCTGAGTATTTCAGGAAGAA	811	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.654	0.546	1.224	1.223	1.295	1.224
Raw	77.496	90.813	199.406	279.696	120.643	120.818

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363708	3276	7e-23	820 - 879	98	59 / 60	plus	ABC10257
MLOC	MLOC_6269.2	3610	7e-23	937 - 996	98	59 / 60	plus	ABC10257
MLOC	MLOC_6269.1	2673	7e-23	1036 - 1095	98	59 / 60	plus	ABC10257
JLOC1	JLOC1_4079.1	3615	4e-23	938 - 997	98	59 / 60	plus
Harvest21	ABC16289	872	3e-25	812 - 871	100	60 / 60	plus
Harvest21	ABC38079	592	1e-23	126 - 185	98	59 / 60	plus
Harvest35	U35_7563	872	3e-25	812 - 871	100	60 / 60	plus
Harvest35	U35_734	1903	1e-23	1719 - 1778	98	59 / 60	minus

Contig Sequence (872 bp)

>U35_7563 872 Hv_44K_v2
CAGACCGCTCGCACTTGCCACTCAAGCAAGTACTACCGCCCCTATTCTCTCTCTCTCATG
GCGGACTCCTCGTGCTGCCCAGCGAAACCCTAATGGCGAACCGGCGGCGCCGCCACGCCC
CCCGCGCCGTAGCCTCGCCGCCACGAGCTCCCTTGGAAGATTGGAAGCTCTCGACCCGGC
GAGGAAACTAGGAGACGCAACGCCTCAGGGACAGGGAGGGAGGCGCCATGGGCGATCTGA
AGGAGATGAAGTACAGGCGGAGGATTGGGCTCGAGGAGCGCGCGCAATGCAGCGACCAGA
GGGGCGTCGACTGGGGCGTGCTCAAGCAGGACCCCGTGGAGCTGCTGCGCAAGCTGGACG
AGCTGAGGGACCAAATCACGCGCTCCTGCCAGGTCGCCCAGCAGCCACGGGAGCACCGTC
GGGTGGGCCGCCGACCGCCCTCCTTGCTACCCGAGCTTCCCGAGCCGGTGCCTCTACCCG
GGTATCATCGCCCACGCTATGGTGGTGGTGCCCGGTATGGGCATGGCTTGCCGCTGAGCC
CATGTGAGCCGCACCACTCTGATCATGGGGAGAGGTATGCGAGGCAGTCAAGTGGAAGTG
GGCGGTATCGCCAGTACCCAGGGAGGCAGTGGGACAACGGCGGGAATTACCATCAGTATG
GGTGTGCTAGTCCGCATTATCCGCATGGACAGAGGGCGGCACCACAAGAAGAGCACATAC
CGATGGCCAGATACTTCGCGGGGCAGCATGAGTGCTACCGATTTGAAAGGTCACCATCTA
TTTCATCAGATTATGACCAAAGGTCTGTGGCATCATCGCTTTACTCTCACCGCTCGGAGT
CAAAGAAAAGGGCTGAGTATTTCAGGAAGAAG

Homology of Contig U35_7563 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g43330.1	808	1e-100	protein\|extra-large G-protein-related, putative, expressed
Brachypodium v1_2	Bradi2g43830.1	796	5e-116
Arabidopsis v10	None