barSeed - Barley Seed Development Database

Probe CUST_36686_PI390587928

Source Contig U35_7569

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36686_PI390587928	Hv_44K_v2	CTTTCATGATCATCATCAGCATCATCGAATGTAACGTACCTACGTACTTCCATCCAGGTC	1231	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67174.1	1692	2e-24	159 - 218	100	60 / 60	minus	ABC24100
JLOC1	JLOC1_44318.1	1847	8e-25	1474 - 1533	100	60 / 60	plus
Harvest21	ABC24100	743	3e-25	27 - 86	100	60 / 60	minus	ABC24100
Harvest35	U35_7569	1317	3e-25	1232 - 1291	100	60 / 60	plus

Contig Sequence (1317 bp)

>U35_7569 1317 Hv_44K_v2
TGCCCAACCTCCACCTGCCGTCCTTCTCGCCGCCGCGCAAGAAGCCGCGGATCCCGTCCT
ACGCCGACTTCCCCTTCGACGGGCAGCTCTTCCACCCGCCGCCGCCGCCGTTCCCGCCCA
ACCACCCGCTGGCGCACGATCAACTCATGCACCACAGCTTCCCCTTCTTCCCCTTCCCGG
ACAGCAATGGTGCTCCTCTCGCAGGGATACAGGGAGCCAGGCATGCGCAATTCGGTCCGT
CCTTTTCGGATCTCCACCCCAGCAACCTGCAGTCGAGCCTGCTCTACTCCGGCGGCGCCC
GCCGCCCGCCCGCGGCGACCGACCACGTTGCTCCCCGCGCACCAAGGATCAGCACCGACC
TCACCATCGGCACCTCGCCCGCCCGCGAAGACGACGTCAGGGCGTGCACCCCGCCAAAGA
AGGCCGGGGACGTCAAGACTCTGCTGCTCTTCGGGCAGGCGATACTGACCGAGGAGCAGA
TGAAGTCCTCGCCGGTGGCCGGCGGGTGCGGCTCGCCCAACTGGGACGCGGAGAAGGCGC
CCAACCTCTCGGAAGGCTCCGGGTCCGGCTCCGGCGTGATCCAGGGCAGCCCAAGCAACA
ACAACAACAACAACACGTCCTCATGGAGGCTGCAGTGGTTCGGGGACAGCGGCAGCCAGG
CGGCGCCGGAGCTGGGGCTGGAGCCCGGGCAGTGCAAGGTGTTCGTGGAGTCGGACGCCG
TGGGGCGCAACCTGGACCTCTCGGCGCTGGGCTCGTTCGAGGAGCTGTACGGCCGCATGT
CCGACATGTTCGGCATGGACCGCGCTGAAGTGAGGAACCACGTGCTCTACCGCAGCGCCG
CCGGCGAGGTGAAGCACATCGGCGATGAACCTTTCAGCGCGTTCGTGAAGTCGGCCCGGA
GGCTGATGATCCTGGCGGACGCGGGGAGCGACAACATTGGGGGCTAGGAAGGGAGGCAAG
CAGCAACATCCATCGATCTTGAGCCGAATAACCTAGGTCGCCGGCGACCCCTGGACCTCC
ATTAGCGAGCAATAAGCCGGAGCAAGTACCACCCCACGCCTACAGCCCAAGTACAAGCTG
TGGTTTCTTCCTTGTCGAGAGTTAGCTCATTTCCCTTTGCATTTTTCTCGTCGTCGTAGC
CGTACCGTAGGCAGGAGCTGCAAACAAATCAATGTAGCAGCAGCAGCAGCAGCAGCAGTA
CCACTCTGGATACCACTCCTAGCAGCAGTACCTTTCATGATCATCATCAGCATCATCGAA
TGTAACGTACCTACGTACTTCCATCCAGGTCGCCATGCCATGCCATGCCATGCCATG

Homology of Contig U35_7569 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g43910.1	696	6e-92	protein\|auxin response factor, putative, expressed
Brachypodium v1_2	Bradi3g49320.1	695	4e-86
Arabidopsis v10	None