barSeed - Barley Seed Development Database

Probe CUST_36682_PI390587928

Source Contig U35_7573

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36682_PI390587928	Hv_44K_v2	GAATGGTGTGGAGGTGAAGTTGCAGAGGAATGCCCTGAGTGTCTTGGAGGCTCCAACTGG	592	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.273	0.290	1.111	2.310	1.165	1.371
Raw	21.986	36.660	127.056	401.601	75.983	94.172

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249371.1	1366	2e-24	485 - 544	100	60 / 60	plus	ABC17800 ABC17801
MLOC	MLOC_59390.1	1553	2e-24	611 - 670	100	60 / 60	plus	ABC17800 ABC17801
JLOC1	JLOC1_38649.1	1683	8e-25	617 - 676	100	60 / 60	plus
Harvest21	ABC15842	698	3e-25	586 - 645	100	60 / 60	plus
Harvest35	U35_7573	707	3e-25	593 - 652	100	60 / 60	plus

Contig Sequence (707 bp)

>U35_7573 707 Hv_44K_v2
GTCCCCCGGGCCTGCAGGNAATTCGCACGAGGATTCACTCTCCTCTCCTCTCCTCTCCTC
TTTGAGCCAAGAGAGAAAAAGAAACAAGAAGAAGCGCTGTGCTCTGCTCTGCTCTGCTCT
GCAAAATTGGATCTTCTTCACATCCTGCGCCTGCATTCCCTCCGGATCGATCGATCTGCT
CCGATCCGATTCGATTCCATCCGATCCGAACAAGCAAGCAATTGGATTGGATTGGATTGC
GCTCCTCCTCTCCGATCCACGCAATTGCGATTGCAAAATTGCAAATTGCAATTCGAGGGA
GGGATCGCTGGCCGCTCCATTGCTACCATTCTGGATCCGCCCCTTCATCAGAGCAGAGCA
GGGACAGGGAGGCCGGCCGGTGAAGCAGTATGATGATGGGGACCGATGTCTGTTCTTCGC
GGATGCTGTCGCTGCCCCGCTACGAGAGCGGCGACGAGGAGCTCACCGTGCTGCCCAGGC
ACACCAAGGTCGTCGTCACCGGTAACAACCGGACAAAGTCCGTGCTGGTCGGCCTACAGG
GTGTTGTCAAGAAGGCTGTTGGCCTTGGAGGCTGGCACTGGCTGGTTCTGAAGAATGGTG
TGGAGGTGAAGTTGCAGAGGAATGCCCTGAGTGTCTTGGAGGCTCCAACTGGNCATGAAG
ACGACGACGAGATCGATGGCAACAACAACTCGTTCTGCGGCAGCTTC

Homology of Contig U35_7573 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g57740.1	222	3e-59	protein\|expressed protein
Brachypodium v1_2	Bradi5g00640.2	198	3e-64
Arabidopsis v10	None