barSeed - Barley Seed Development Database

Probe CUST_36673_PI390587928

Source Contig U35_7583

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36673_PI390587928	Hv_44K_v2	GCTCATTCCGAGCCGTACTCCAGGGGAACGAAAATGATGAGCTGGAAATTTGTTTGGAGA	464	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59487.3	2820	2e-24	530 - 589	100	60 / 60	plus	ABC11464
MLOC	MLOC_59487.1	2771	2e-24	557 - 616	100	60 / 60	plus	ABC11464
JLOC1	JLOC1_38715.1	2894	8e-25	557 - 616	100	60 / 60	plus
Harvest21	ABC37124	351	3e-25	292 - 351	100	60 / 60	plus
Harvest35	U35_7583	524	3e-25	465 - 524	100	60 / 60	plus

Contig Sequence (524 bp)

>U35_7583 524 Hv_44K_v2
AACACCACAACCGCGCGCCGCGCCACACCCACAGATCCCACCGTCGTAAATCTTCCTACG
TGCTTTGATTGGAGGACTGCGGTGCGGGGGGAGGAAGATGACGGTGGGAGCCGGGATCGC
GGTCCAGGAGGACGGCAGCCTGGCGGCGCTGGGGGCCACGGTCCTGACGGAGGTGCGCGA
CAATGTGCTCGTCACGCCGGCCGCCGGGGGCGGCATGCTCAACGGCGCGTTCCTCGGCGT
CCGGTCGGCCCCCGCCGGCAGCCGGAGCGTCTTCCCCGTCGGGAAGCTCAGGGACCTGCG
ATTCATGTGCACGTTCAGGTTCAAGATGTGGTGGATGACACAGAGGATGGGCTCATCGGG
CCGCGACATCCCCGTTGAGACGCAGTTCTTGATCGTCGAGGCCGCCGATGGTGCCGGAGA
CGAGCAATCTGCTGTGTACACCGTCTTCCTCCCGATCCTGGAGGGCTCATTCCGAGCCGT
ACTCCAGGGGAACGAAAATGATGAGCTGGAAATTTGTTTGGAGA

Homology of Contig U35_7583 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g38710.1	754	1e-70	protein\|uncharacterized glycosyltransferase, putative, expressed
Brachypodium v1_2	Bradi3g39220.1	765	2e-77
Arabidopsis v10	AT1G55740.1	754	3e-54	\| Symbols: AtSIP1, SIP1 \| seed imbibition 1 \| chr1:20835507-20838707 REVERSE LENGTH=754