barSeed - Barley Seed Development Database

Probe CUST_36672_PI390587928

Source Contig U35_7584

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36672_PI390587928	Hv_44K_v2	ATAAAGACGGTACTTACATCTGGTTCTCTATGGGATGAGAATTCCTTCCAGCAACCAGAC	320	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64388.11	2402	2e-24	2013 - 2072	100	60 / 60	plus	ABC24807
MLOC	MLOC_64388.8	2976	2e-24	2127 - 2186	100	60 / 60	plus	ABC19630 ABC24807
MLOC	MLOC_64388.1	2432	2e-24	2341 - 2400	100	60 / 60	plus	ABC24807
MLOC	MLOC_64388.2	2336	2e-24	2245 - 2304	100	60 / 60	plus	ABC24807
MLOC	MLOC_64388.6	2577	2e-24	2224 - 2283	100	60 / 60	plus	ABC24807
MLOC	MLOC_64388.12	2445	2e-24	2164 - 2223	100	60 / 60	plus	ABC24807
MLOC	MLOC_64388.7	2478	2e-24	2113 - 2172	100	60 / 60	plus	ABC24807
MLOC	MLOC_64388.10	2366	2e-24	2110 - 2169	100	60 / 60	plus	ABC24807
MLOC	MLOC_64388.4	2764	2e-24	2212 - 2271	100	60 / 60	plus	ABC19630 ABC24807
MLOC	MLOC_64388.14	4073	2e-24	2155 - 2214	100	60 / 60	plus	ABC19630 ABC24807
MLOC	MLOC_64388.13	4065	2e-24	2147 - 2206	100	60 / 60	plus	ABC19630 ABC24807
MLOC	MLOC_64388.3	2535	2e-24	2221 - 2280	100	60 / 60	plus	ABC24807
JLOC1	JLOC1_42278.4	4071	8e-25	2027 - 2086	100	60 / 60	plus
JLOC1	JLOC1_42278.3	3003	8e-25	2027 - 2086	100	60 / 60	plus
JLOC1	JLOC1_42278.2	4087	8e-25	2043 - 2102	100	60 / 60	plus
JLOC1	JLOC1_42278.1	3019	8e-25	2043 - 2102	100	60 / 60	plus
Harvest21	ABC50984	675	3e-25	297 - 356	100	60 / 60	minus
Harvest35	U35_7584	709	3e-25	321 - 380	100	60 / 60	plus

Contig Sequence (709 bp)

>U35_7584 709 Hv_44K_v2
CAAGTTGTGCTCCACTCTTCGTAAATGACAATGATCGCAGGTGGAGTCCAGATGCCATAG
TCTTCAACTCGTGGCAGCACTATGGATGTCCAAACTACTGGATGTTACACTTCTTCAAGG
ACTCAAGTGGTGCAGCACTTCATCCATCTACCATTCAAGTATCGAACTATAACCAACTGG
TCGCATCGGCTATCACTTGGCAGAATTCTAAAGATGGAAATGCTTACCTAAAAATAAAGG
TTCTAAATTTCGGCAACAAAGCTGTAGATCTTAGTATCTCTATAACCGGGCTGGAGAACG
GGATTCAGACATTTGGCTCCATAAAGACGGTACTTACATCTGGTTCTCTATGGGATGAGA
ATTCCTTCCAGCAACCAGACAAGGTGGTGCCGGTGGAAAGCCCGATAACCAATGCGAGGG
AGGAGATGAGTCTTGTACTGGATCCGTACGCCCTCACCTCGTTTGATCTCCTCTTGGACC
AGAGCAGTAGCACGATGATGCATCCAGTCCCAGAGTCAAGCTTGCATTCAAGTGTGTGAA
TACAGAAAGGAATGCGATAGACGAGAGAACCGCCTCTCAGTGCAAATCATGAACTTGGAA
TAAACATAAACTTAATGTGGGCGTGTGTCGATGTACATTTTACATACATACATATATATG
CGTCAAAAGGCAAGCGCTTATCTATGATTAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_7584 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g20420.1	676	1e-92	protein\|alpha-N-arabinofuranosidase A, putative, expressed
Brachypodium v1_2	Bradi1g63990.2	676	3e-101
Arabidopsis v10	None