barSeed - Barley Seed Development Database

Probe CUST_36669_PI390587928

Source Contig U35_7587

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36669_PI390587928	Hv_44K_v2	CGCGATGTACGACGCATCTTCACAGGAGAAGATGAAGTTTGGATTCTTTTCGGTGAACTT	709	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65360.3	2891	2e-24	608 - 667	100	60 / 60	plus	ABC44769
MLOC	MLOC_65360.1	2682	2e-24	610 - 669	100	60 / 60	plus	ABC44769
MLOC	MLOC_65360.6	1934	2e-24	603 - 662	100	60 / 60	plus	ABC44769
MLOC	MLOC_65360.7	1635	2e-24	603 - 662	100	60 / 60	plus	ABC44769
MLOC	MLOC_65360.4	1537	2e-24	605 - 664	100	60 / 60	plus	ABC44769
MLOC	MLOC_65360.5	1723	2e-24	605 - 664	100	60 / 60	plus	ABC44769
MLOC	MLOC_65360.8	1663	2e-24	603 - 662	100	60 / 60	plus	ABC44769
MLOC	MLOC_65360.9	1458	2e-24	603 - 662	100	60 / 60	plus	ABC44769
MLOC	MLOC_65360.2	3015	2e-24	610 - 669	100	60 / 60	plus	ABC44769
MLOC	AK375208	1487	7e-23	1243 - 1302	98	59 / 60	plus	None
JLOC1	JLOC1_43002.4	1474	8e-25	895 - 954	100	60 / 60	plus
JLOC1	JLOC1_43002.3	1417	8e-25	895 - 954	100	60 / 60	plus
JLOC1	JLOC1_43002.2	1691	8e-25	1087 - 1146	100	60 / 60	plus
JLOC1	JLOC1_43002.1	1753	8e-25	1088 - 1147	100	60 / 60	plus
Harvest21	ABC16400	770	3e-25	710 - 769	100	60 / 60	plus
Harvest35	U35_7587	772	3e-25	710 - 769	100	60 / 60	plus

Contig Sequence (772 bp)

>U35_7587 772 Hv_44K_v2
GCCGGCTTCGATTTCTCCTGCTCCTCCTTCCTCCCCTCCGCCGCCGGCCGCACCTGGAGT
TCGGTTGACTTCTTTGACGGGCGTGCCCTCATGGCCGGTGTCCCCGTCGGGAATGGAAGC
GGCTTCAAGGTGTACCATGAATTTCTGACCAGGGACCTGGCCGTCCCGGAGACCTGAAAG
CGCTGGTCCATATACAGGATCTCTTCGACATGGAGACTTTCCTTGCGCCCGGCGAGCATG
CGGAGGACCCCTTGTCATTCAGGGTGATATGTTTGGTGCAATGCCGAAGCAATCTGCTGC
TTCTGATCTTCTCCTCTTTGGATGGACAGTGGCATGTTCTTACTTATGACCAATGGGGTG
TTTGTGCTACGCTTGCTTCATTTGTGAAGTCTGAGCCTGGGCTCTCCAGTCGTCAGTTTG
TCCACGGATGCTTCTATTGGCGTTTGCATAAGCGGTGTGAGTTACTTGTGCTTAACTTGC
GTGCAATGGAGTTCTCTGCTATCAAATCTAGACAACGGAGCGATAGTTTTGTTGTTGTTG
AGGCGGCAAAAGGAATGCTCGGGATGCTCACTAAAGGTTATGGCAATGACCGATGTTGTC
TCCAGTATTCCATTCTGACAAATAACCAATGGCACTTTGAGAAGGTCATCCCGTTGCCAG
TAAAGTATGTGAGTCTGGTTGGTGTAGCCGGGGGATACCTGCTCGTATACGCGATGTACG
ACGCATCTTCACAGGAGAAGATGAAGTTTGGATTCTTTTCGGTGAACTTGAA

Homology of Contig U35_7587 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g03607.1	413	3e-71
Arabidopsis v10	None