barSeed - Barley Seed Development Database

Probe CUST_36665_PI390587928

Source Contig U35_7591

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36665_PI390587928	Hv_44K_v2	AACTGTAACTGAATATATTTCTTCCCATCTTGATGCCGGAGATCTGCCTGGGAGGTATGC	1366	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.621	1.451	1.110	0.970	0.585	0.453
Raw	157.935	218.671	145.446	191.726	42.725	35.501

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_35083.1	1823	7e-23	514 - 574	98	60 / 61	plus	ABC16453
MLOC	MLOC_35082.3	3604	7e-23	2768 - 2828	98	60 / 61	plus	ABC16453
MLOC	MLOC_35082.1	3530	7e-23	2702 - 2762	98	60 / 61	plus	ABC16453
JLOC1	JLOC1_22665.4	4129	4e-23	2474 - 2534	98	60 / 61	plus
JLOC1	JLOC1_22665.3	4156	4e-23	2501 - 2561	98	60 / 61	plus
JLOC1	JLOC1_22665.2	4151	4e-23	2496 - 2556	98	60 / 61	plus
JLOC1	JLOC1_22665.1	4231	4e-23	2576 - 2636	98	60 / 61	plus
Harvest21	ABC16453	1434	3e-25	9 - 68	100	60 / 60	minus	ABC16453
Harvest35	U35_7591	1434	3e-25	1367 - 1426	100	60 / 60	plus

Contig Sequence (1434 bp)

>U35_7591 1434 Hv_44K_v2
CCAATTCATCACTAGGTTCAACTGGTGGTGAGAATTCTCGCTCCAAATTCAATCCACGTG
ATACAACTGTTGTAAACTCGAGGTCATCTGCATCCACATTGCCTGGTACTCATGTTGAAA
TTTCTGTATCTCAAGAGGGACCTCCGGTGGTACATTCTTCATGTTTAACATCTGATGTTC
AGAATAACGTGTCACTTGATATGATGGCTGGTGCTTTGGATAGCAATGTGCTTCCTCAAG
AATCTGTTGATGTCTCCATGTTGTCTGGAAGAAGCCATGCACCGTTGGTTGATGGTTCCA
TGCAACCAACTAATGAAGGCACGTTTAGTCCCAGGGCATGTGGCTATAACCAACACTGAT
AGAAACTCTCGTCCACCATCTGTGGGCAATCAGGAAATGTTAGATGTTACTTCAGGGGTT
CAGCGTACCCGCAAGAGTGATACAAATGGACTCCTAAAGGAAAATGTACCAATCGGAGCA
GTGGCGATGGAAGAAGATAATGGTCATGGTGGCAGCTTGTCAGTTCGTCAACTAGCCAAT
CAGGCGGTAATTGCACTGCCTGCCACAAATGCCCAGTCAGATGCTAGTTCTGCAGATCGC
GTTGCTGGAAACTTCGACCTCACAGACCCAACAAGATCATCTGTTGCTTCGGACAATGCT
GTTACTCCCCTGGCTACGAATCATGGTGCAAAGACAGGTAATAGTCATGATTCTGCAGGC
AAAGAAATACCGTGTGATCCTGAGGAGTTGCAGGGTGTGCCTACAAGAAATATACTATTT
AGGTTAAGAAGTGCTGCTGCTAAGCAGACCAAGCCCTCTACAGTACCCAGACGGTCATCA
AGGCTTGCCCCAAAGTGATTGCTAATGACAGGGTTGAGATCCACCACCAAGAATGATGCA
TAGCTTAACTGCCGCCGTAGTCGATTCCCAACAGGGAATACCTTCCTAGCCTCCAACCTC
CACAGTTCTTGTCGATTCGTCTTGCTACCAACTGAGTAGTCTTTTTGCATACTTCTGTCA
ACAGCTCAATGCCACCAAATGCTTTTTGTCGTTCTTCTCCGTTATACAGCATCTGCTATA
CTTCACACAGTGCCGAGCTCTGCATACACCAACCATTGTACAAACATATCAGGATTATTA
GGAAATTTTTGAACCTGCAGTATGTCACCTTGTTTTCCAGATGGGCAATAGATGTCGTCG
TACTGTACTGTAATACTGTATATGGCTGGTTGTGATTTGTGTGCTGTGATAGGATTGCTA
TCCATGCAGGATCCAGCTCGCTGCTTATATATTTTCTGTATTGCCTGCCATCTGTGGCAG
TGTTCCCCGCCTTGCCAGATTGATGTTGCAAGGTTTGGTTGGTGAAAACTGTAACTGAAT
ATATTTCTTCCCATCTTGATGCCGGAGATCTGCCTGGGAGGTATGCCTCGCAAT

Homology of Contig U35_7591 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g21770.1	611	1e-71
Arabidopsis v10	None