barSeed - Barley Seed Development Database

Probe CUST_36662_PI390587928

Source Contig U35_7594

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36662_PI390587928	Hv_44K_v2	AGTTATTTCCAACGAGTTGACTGTGCAAGTGAAGTGCTCATTGGCATATATGGACTTTGA	1630	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.000	1.326	1.805	1.712	0.661	0.681
Raw	114.765	238.698	281.438	434.211	56.978	64.158

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354753	2377	2e-24	1546 - 1605	100	60 / 60	plus	ABC16128 ABC16774
MLOC	MLOC_70016.1	1118	2e-24	291 - 350	100	60 / 60	plus	ABC16128 ABC16774
JLOC1	JLOC1_46431.1	1427	8e-25	495 - 554	100	60 / 60	plus
Harvest21	ABC26159	928	3e-25	869 - 928	100	60 / 60	plus
Harvest35	U35_7594	1690	3e-25	1631 - 1690	100	60 / 60	plus

Contig Sequence (1690 bp)

>U35_7594 1690 Hv_44K_v2
GCTCGAACCTCCGGCTCCACTCGCCGTCGCCGCCGCCGCCGTCGAAGGGATGGGGACGTC
CGTGCAGGTGACGCCCCTGAGCGGGGCGTACGGGGAAGGCCCCCTCTGCTACCTGCTCGC
CGTCGACGGCTTCCGCTTCCTCCTCGACTGCGGCTGGACCGACCACTGCGACCCCGCCCT
CCTCCAGCCCCTCGCCAGGGTTGCGCCAACAATAGATGCTGTTCTTCTGTCTCACCCTGA
CATGATGCATCTAGGAGCTTTGCCCTATGCTATAAAACATCTCGGATTATCTGCACCAGT
ATATGCAACAGAACCTGTGTATAGACTTGGCCTTTTAACCATGTATGATTATTTCCTATC
TCGATGGCAAGTTGCAGACTTTGACTTGTTTTCTTTGGATGACATTGATGCCGCATTCCA
GAATGTTGCGAGACTGAAATATTCACAAAATCATCTTCTTAAGGATAAAGGTGAAGGAAT
AGTTATTGCGCCACATGTGTCGGGCCATCTTTTGGGCGGTACGGTATGGAAGATAACAAA
AGATGGAGAGGATGTCGTCTATGCTGTTGACTTTAACCACCGAAAAGAGAGGCATTTGAA
TGGTACTACCCTTGGATCTTTTGTGCGGCCAGCTGTTTTGATCACTGATGCTTACAATGC
CTTGAACAATCAGGTCTACAAAAGGCAGCAGGATCAAGATTTCATCGATTCAATGGTGAA
AGTTCTATCAGGTGGCGGTAGTGTATTATTGCCTGTTGATACAGCTGGTAGAGTGCTAGA
ACTTCTTCTAACAATGGAGCAGTACTGGGCTCAACGACATTTGGTCTATCCTATCTACTT
TCTGACAAATGTTTCTACAAGTACTGTTGATTTTGTCAAGAGTTTTCTTGAATGGATGAG
TGATTCGATCTCTAAGTCTTTTGAACACACTAGAGATAATGCCTTCTTATTAAGACATGT
CTCACTGATAATTAACAAAGAAGAGCTAGAGAAACTGGGAGATGCTCCGAAGGTGGTTCT
AGCATCCATGTCAAGTTTGGAGGTTGGCTTTTCTCATGACATTTTTGTTGAGATGGCAAA
TGAAGCTAAAAATCTAGTGCTTTTTACTGAGAAGGGTCAGTTTGGGACACTTGCTCGCAT
GCTTCAAGTGGATCCACCCCCCAAAGCTGTAAAAGTCACTATGAGCAAGCGAGTTCCTTT
AGTTGGTGATGAGCTGAAAGCTTATGAAGAGGAACAAGAACGGATAAAAAAGGAAGAAGT
GCTAAAGGCTAGCCTCAGCAAGGAGAAGGAGCTAAAGGCTTCTCATGAATCAAATGCAAA
GGCTTCTGATCCCATGGTTGTTGATGCAAGCTTGTCTCGTAAATCATCCAATGCTGGTTC
ACATGTTGGCGGGAATGTGGATATTCTAATTGATGGATTTGTCTCTCCGGCGACCAGCAT
CGCTCCAATGTTTCCTTTCTTTGAAAATACTGCTGACTGGGATGACTTCGGCGAGGTTAT
CAATCCTGATGATTATATGATGAAACAAGATGAAGTGGATAATAATATGATGCNTCGGTG
TTGGAGATGGCATGGATGGTAAGCTTGACGAGGGCTCTGCACGTCTTCTTCTTGATTCAG
CACCGTCAAAAGTTATTTCCAACGAGTTGACTGTGCAAGTGAAGTGCTCATTGGCATATA
TGGACTTTGA

Homology of Contig U35_7594 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os09g39590.1	739	protein\|metallo-beta-lactamase, putative, expressed
Brachypodium v1_2	Bradi2g00840.1	739
Arabidopsis v10	AT5G23880.1	739	\| Symbols: EMB1265, CPSF100, ESP5, ATCPSF100 \| cleavage and polyadenylation specificity factor 100 \| chr5:8052550-8058147 FORWARD LENGTH=739