barSeed - Barley Seed Development Database

Probe CUST_36656_PI390587928

Source Contig U35_12600

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36656_PI390587928	Hv_44K_v2	GTTCATGGCCATGTTCCTGCCGGTTTTCAGCAACATGGTTCATAGAGTGGTTTCAGAGGA	146	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65527.3	3628	7e-23	3411 - 3470	98	59 / 60	minus	ABC14915
MLOC	MLOC_65527.4	3576	7e-23	3359 - 3418	98	59 / 60	minus	ABC14915
MLOC	MLOC_65527.2	5575	7e-23	5115 - 5174	98	59 / 60	minus	ABC14915
MLOC	MLOC_65527.1	5990	7e-23	5436 - 5495	98	59 / 60	minus	ABC14915
JLOC1	JLOC1_43122.1	3099	4e-23	296 - 355	98	59 / 60	plus
Harvest21	ABC23524	205	1e-24	147 - 205	100	59 / 59	plus
Harvest35	U35_12600	206	3e-25	147 - 206	100	60 / 60	plus

Contig Sequence (206 bp)

>U35_12600 206 Hv_44K_v2
CAGTCCAAGCGGCCCCGTCCATGTTCCGGCGACGGCGGCGAGCTCTCCCGGCCTTGCAAG
CGCTGGACATCACTCGTCATGCATGTGAGGGGGAGGAGGACCATGGGTCAGGGAGTGTTT
GGCTTCAGAGGGATCATAGGGGAGGAGTTCATGGCCATGTTCCTGCCGGTTTTCAGCAAC
ATGGTTCATAGAGTGGTTTCAGAGGA

Homology of Contig U35_12600 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None