barSeed - Barley Seed Development Database

Probe CUST_36655_PI390587928

Source Contig U35_12601

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36655_PI390587928	Hv_44K_v2	GCCATATATGGTCCTTGATAACGTCCAACTATGTCATGTAATAAGGGAAAAGATTTCCGT	1024	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.767	2.662	1.140	0.869	0.512	0.523
Raw	37.483	59.880	21.524	25.779	2.840	5.065

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14667.10	3070	2e-24	2965 - 3024	100	60 / 60	plus	None
MLOC	MLOC_14667.4	4571	2e-24	4487 - 4546	100	60 / 60	plus	None
MLOC	MLOC_14667.5	4558	2e-24	4474 - 4533	100	60 / 60	plus	None
MLOC	MLOC_14667.8	4263	2e-24	4058 - 4117	100	60 / 60	plus	None
MLOC	MLOC_14667.9	4393	2e-24	4188 - 4247	100	60 / 60	plus	None
MLOC	MLOC_14667.6	4687	2e-24	4550 - 4609	100	60 / 60	plus	None
MLOC	MLOC_14667.7	4559	2e-24	4422 - 4481	100	60 / 60	plus	None
JLOC1	JLOC1_10014.1	4484	8e-25	4285 - 4344	100	60 / 60	plus
Harvest21	ABC22904	1084	3e-25	1025 - 1084	100	60 / 60	plus
Harvest35	U35_12601	1084	3e-25	1025 - 1084	100	60 / 60	plus

Contig Sequence (1084 bp)

>U35_12601 1084 Hv_44K_v2
GGCACGAGGGCCGTGTCAGAATATTCCAAGCATTGGCAGGATGACATTACTCCGGGATAG
AAACTTTGAAAGTAAGAAAGCGACAAGGCTACGGGTTAAAGCAACTCAGCGACCTAAACC
AACTTCGTGGCAGACTGATTATCTGGGACCTAAACCAGGAATCTCTTGAAGCCAATCTGT
ACGATAAAGAAGGGCTCAGAACATTGGTACTGCTGTGGGGTTATGATAAGAGAGGAGATT
TAAAAGAACAGGAGGTTCAGACAGAGGTACTAGAGGGTCTCTGCCCACCGAAGTATCTCG
AACCATTGATTATACAGTGCTACAATGGTTTGAGATACCCAAGTTGGATGATGGGTGCTA
AGCACAATGGTGGCCCAAAGTATCTGAACGAACTCACCCTCGAGTCTTGCAGCACAAAAC
TTGGTCCTGAATTTTGTGGGTTTTTCTCTCACCTCCGTAAACTCAAAATAAGCGATTGCA
GCTGGGGCACCTTGCCAGATAACATGGAGCACCTGACATCACTGAAGGACCTGACCGTGG
ATTTCTGCCGGAATATTCGATCGCTTCCGCGGTCTCTTGAGCACTTGAGACTGCATGGAT
GCAATGAGATGTTGATGAGATCGTGCACAACAGTTGGAGATCCCGATTGGGAAAAGCTTC
AGCACGTTCCTGATGTATATATTGATGGTATATCACCATATCTTCCTTGTCAAGAGTTTT
CGTGATCGTTTCCTAATCTGTTTGCTAAAGTGTCAAACACCAGGCGACAGGGTGGAGACG
AGAGCCCAAGTAGATGGCGGATCTTCATCATCAGCGCCCAAGAACCTGTTCCGCAGCCCT
ATGGCGTGGAAGTCGTGTGATCCTTAAACCTGCCTGCCAATATACTTGGTCCATTCCATT
GTATGTCACTGATTTTGAGAGTGAAGTGCTGCTGCTGCAGTCACTGCGTCATCAGCTACA
CGGCGCAGGATTTGATCATGTTTGCAAATGTTGTGCACTGGTTTTATTTGTTCCCTCCCT
ATGGGCCATATATGGTCCTTGATAACGTCCAACTATGTCATGTAATAAGGGAAAAGATTT
CCGT

Homology of Contig U35_12601 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None