barSeed - Barley Seed Development Database

Probe CUST_36653_PI390587928

Source Contig U35_12606

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36653_PI390587928	Hv_44K_v2	CATCCCGGTATGTCATCCAGTCAAAATCATAAAACAGCTCATTATGGTGCTGTTACAGGA	635	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365737	1715	2e-24	1010 - 1069	100	60 / 60	plus	ABC38776 ABC39830
MLOC	MLOC_69714.8	1995	2e-24	1266 - 1325	100	60 / 60	plus	ABC38776 ABC39830
MLOC	MLOC_69714.1	1179	2e-24	1067 - 1126	100	60 / 60	plus	None
MLOC	MLOC_69714.10	2916	2e-24	870 - 929	100	60 / 60	plus	ABC29973 ABC38776 ABC39830
MLOC	MLOC_69714.3	1569	2e-24	799 - 858	100	60 / 60	plus	ABC38776 ABC39830
MLOC	MLOC_69714.11	1011	2e-24	482 - 541	100	60 / 60	plus	ABC38776 ABC39830
MLOC	MLOC_69714.6	1990	2e-24	1323 - 1382	100	60 / 60	plus	ABC38776 ABC39830
MLOC	MLOC_69714.4	2004	2e-24	1234 - 1293	100	60 / 60	plus	ABC38776 ABC39830
Harvest35	U35_12606	698	3e-25	636 - 695	100	60 / 60	plus

Contig Sequence (698 bp)

>U35_12606 698 Hv_44K_v2
GCTTCATAGCCAAGCACAGGAGCATTCTGCTTGTGGACAGGCAGCACGAGCATGGCCACA
AGTTCACCGTCTCCAAGGCCATCTGGTATCCCGTGGACACCGGGCTGTTCGTCACGGCGT
CCTTCGATAACTATGTTAAAGTGTGGGATACAAATTCGACTCAAGTGGTCATGGATTTCA
AGATGCCCGGCAAAGTGTACAGTGCTGCAATGTCTCCGATTGCAACAACGCATATGCTCA
TCGCTACCGGAAGCGCAGACGTTCAGGTCCGCTTGTGTGATATTGCTTCTGGAGCCTTTA
CTCACACGTTGTCCGGTCATCATGATGGTATCATGTCTCTGGAGTGGTCTACCTCAAGCG
AGTGGATCCTAATAAGTGGTGGCTTTGACGGGGCGATACGTTTTTGGGACATAAGACGAG
CTGGATGTTTCCTTGTCCTTGACCAGTTACGGTCTCAGCTAGGAAGACGGCCCCCCGTTC
TTGATACCACCATGGACAATGATCAGAAGAAGTTAGGACGTTCATCTTCATCAAAGAGTT
ACTCAGTTCAACAGAGAACAGCCAATCGTAAGAAGCAGTCCAAAGCATTACACAAAAGTC
TAACCATGGTACGTGGGCATACGCAACAGAAAATGCATCCCGGTATGTCATCCAGTCAAA
ATCATAAAACAGCTCATTATGGTGCTGTTACAGGATTA

Homology of Contig U35_12606 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g20430.1	372	1e-80	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi2g55470.1	590	1e-136
Arabidopsis v10	AT1G27840.3	451	1e-93	\| Symbols: ATCSA-1 \| Transducin/WD40 repeat-like superfamily protein \| chr1:9693332-9696257 REVERSE LENGTH=451