barSeed - Barley Seed Development Database

Probe CUST_3664_PI390587928

Source Contig U35_5286

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3664_PI390587928	Hv_44K_v2	CTGTTAATAGACTTTGAACATCATCAGTCAAGGTTTGAGTTCAATCCATTTCCTCGTTTA	938	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.338	1.925	1.225	0.869	0.467	0.539
Raw	197.309	435.140	240.477	273.920	49.664	63.936

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_41873.3	1951	1e-23	1784 - 1841	100	58 / 58	plus
JLOC1	JLOC1_41873.2	2028	1e-23	1861 - 1918	100	58 / 58	plus
Harvest21	ABC11506	1017	3e-25	939 - 998	100	60 / 60	plus	ABC11506
Harvest21	ABC47553	261	6e-22	17 - 76	97	58 / 60	minus	ABC47553
Harvest35	U35_5286	1014	3e-25	939 - 998	100	60 / 60	plus

Contig Sequence (1014 bp)

>U35_5286 1014 Hv_44K_v2
TGTTGGAAGCTGGTGCAGACCCAAATGTTGTTGACAGGTTTGGTAGATTGCCAATAGAGT
TGGCTGTTGAGTATGGTACACGGGAAGATGTCGCGATTCTCTTTCCTTTCACCTCTCCCA
TTTCAACTGTGGCCAATTGGAGCGTTGATGGAATCATTAGTCATGTGCAGATGGAAATCA
AGCAACTTGAGGATGATAATTTTGTGGAGAAGAGGATCTCTGACCTAAAGCAACAAGCAG
CTGAAGCATTTAAGAAGCAGGATTACCTAAATGCATCAGTGTTCTACACACAGGCACTGA
AGATGGATAACTTTGACGCAAAGTTGTTATCAAACAGGAGCCTCTGCTGGCTTCGCATGG
GTGATGGCGAAAGGTCTTATGAGGATGCAACTGAATGCAAAAAACTGCAGCCAAAGTGGG
CAAAGGCGTACTATCGGCAAGGAGCAGCTCAAATTTTGATGGAGGATTATGATGATGCTT
ACCACTCACTCTTGCGTGCTTTGGAGTTGGACCCGGAAAGTCAAGAGATTGCGGAATTAC
TCTTGGAGACTATTGAGGTGGTATGATCAACCCCGCATGCATCTGTGGAGAGAAGCTCTT
TTTTTGGTGGGTGTGTGTTCTCAGATTAAAACCTTGAACTTCAAATTATGGCGTCTTTCT
GTACGTGATCTGTGGATCGTAGCAGCAGCTTAGAGCAGAACATGTTACTGGGTACCTATT
TTGAGTTCTCTGAAACTCGCATCCTGTTAATATGGAAGTGTGGCAGTGGATGATGAAATG
ACTAACTATCATGTGAGAAGTGCAGCAATGTAAGTATACTGTTACTAGGGCATCCCTAAA
TGCTGCCATCCCCCAAATCTTGTGTAAGTGGTCCTGATGTATAACTAAGGCCGGAAAATC
ATGCACAAGAGGCGATTGCTCAAACCATTGCCATTGATCTGTTAATAGACTTTGAACATC
ATCAGTCAAGGTTTGAGTTCAATCCATTTCCTCGTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_5286 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g43940.1	440	2e-89	protein\|ankyrin repeat domain-containing protein, putative, expressed
Brachypodium v1_2	Bradi4g00747.1	436	3e-96
Arabidopsis v10	None