barSeed - Barley Seed Development Database

Probe CUST_3663_PI390587928

Source Contig U35_16124

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3663_PI390587928	Hv_44K_v2	GTAATTGTTCTGAAGTCCCATCCCCAATCAGTATTGTGTCTTCCTGCATTGCTTAAGTCA	884	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.750	2.893	1.000	0.650	0.910	0.810
Raw	21.269	34.433	10.728	9.948	3.140	3.076

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_49794.1	1147	4e-23	1063 - 1122	98	59 / 60	plus
Harvest21	ABC04437	961	3e-25	885 - 944	100	60 / 60	plus	ABC04437
Harvest35	U35_16124	961	3e-25	885 - 944	100	60 / 60	plus

Contig Sequence (961 bp)

>U35_16124 961 Hv_44K_v2
GAGAAGACGGCGCTCATCGACGAGATCGCCAGTCGTCCGAGCTGAGCCGCACACCGTAAC
TTCCTCAACGTCGTATCGACAACACCCGCGCGGGCCTGATGCCGCAGATCGTGCGCGAGT
TCGAGACCGCCTACAACGCGCTCACCGGCACCGAGGAGGCCGTCGTCACCTCCGTCGTGC
AGCTCGAGTCGCAGGACCTCGCGCAGATCGCCACGCACGTGCAGAACATCACCGGCGCCG
CCAACGTCCGGATCAAGACCCGCCTCGACCCGGAGCTCATCGCCGGATTCACCGTGCAGT
ACGGCCGCGACAGCTCCAACTTCATCGACATGAGCGTCCGCAAGCAGATCGCGGAGATCA
CCTCCGAGTTGGAGATGCCCTCCGTTAACCTCGAAGTCTGATGCTTAGTAATTGCTGTCA
CAAGGATTTGCAACACCCGGTAAGAGCGTTGATCTTCTTCAGACCTGGAGATGTGACGGA
GGGAGGAGGGCATTCTTTTCTGCAAAAAATAGTAATGACATAAATCATTTTTTTGGCAGG
AGCCAGCCATTGTAATTTCTTTTTTGCCTTTGTGCTGTTGAGATCTTGTAATAACAATAT
GCCCCAAAATACTCAACTATAGCAGAGTTCGCTCCTCCAAGTTCAGGCAATGAAGTTTAA
CAACATGTATAGCTATGTATCCGCCGATGAAGTTGTTTGTAGACGTGTATAGGATCCGGC
ATTGCTATCAAGTGGCAGCCAAGATCATGTTTGCGTTCTGTATTTCCGTTTCATCGTGTT
CATCCATGGCTTACACTCAAAAAGGCGTCAGGTGTAGCTGTTCAGTTGTTTTGCTTCTGC
TGCTCCTACAAGTACGCAGTTCTGTGTCTTTGCCACTCTGCTGTGTAATTGTTCTGAAGT
CCCATCCCCAATCAGTATTGTGTCTTCCTGCATTGCTTAAGTCATGGNCCACACCTTCAA
A

Homology of Contig U35_16124 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g59130.1	248	1e-55
Arabidopsis v10	None