barSeed - Barley Seed Development Database

Probe CUST_36636_PI390587928

Source Contig U35_31651

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36636_PI390587928	Hv_44K_v2	ATCAAGGGCTTCGGCATTGCCGGCCGCCCTGACGAGTCGCAGCGCATCTTCGATATGATG	41	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51513.4	2106	2e-24	1450 - 1509	100	60 / 60	minus	ABC12809
MLOC	MLOC_51513.3	2284	2e-24	1474 - 1533	100	60 / 60	minus	ABC12809
MLOC	MLOC_51513.2	3072	2e-24	2290 - 2349	100	60 / 60	minus	ABC12809
MLOC	MLOC_51513.1	3887	2e-24	2451 - 2510	100	60 / 60	minus	ABC12809
JLOC1	JLOC1_32916.2	2353	8e-25	752 - 811	100	60 / 60	plus
JLOC1	JLOC1_32916.1	2791	8e-25	1190 - 1249	100	60 / 60	plus
JLOC1	JLOC1_32915.1	2821	8e-25	2443 - 2502	100	60 / 60	minus
Harvest35	U35_31651	383	3e-25	42 - 101	100	60 / 60	plus

Contig Sequence (383 bp)

>U35_31651 383 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGACAGCACCTTCAACACGCTCATCAAGGGCTTCGGCATTG
CCGGCCGCCCTGACGAGTCGCAGCGCATCTTCGATATGATGGCCGGCGGTGACGGCGACG
GCGACCGCGACAGGGTCGCGTCCACGGTGAGGCCGAACCTGACCACGTACAACATCCTGG
TGAAGGCCTGGTGCGACCACCGGAGGCTGGAGGAGGCGTGGGGCGTGGTGGGCAGGATGC
GGGCGCGCGGCGTGGAGCCCGACGTCGTCACCTACAACACCGTCGCCAGCGCCTACGCCA
AGAACGACGAGACGTGGCGGGCGGAGGAGCTCGTGGTGGAGATGGTGCGCGCCAGGCTGC
GCACCAGCGAGCGCACCTGGGGC

Homology of Contig U35_31651 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g12810.2	637	3e-55	protein\|retrotransposon protein, putative, unclassified, expressed
Brachypodium v1_2	Bradi2g07630.1	580	9e-58
Arabidopsis v10	None