barSeed - Barley Seed Development Database

Probe CUST_36635_PI390587928

Source Contig U35_31652

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36635_PI390587928	Hv_44K_v2	ACCTGGCGAACTGAAACATCTCATGTTTGCTTGAAAGAGGGATCTATTACGATACCGCCA	165	GeneList: sienna3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	11.501	5.232	1.234	0.505	0.815	0.853
Raw	105.738	69.664	15.319	8.261	4.415	4.821

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_31652	486	3e-25	166 - 225	100	60 / 60	plus

Contig Sequence (486 bp)

>U35_31652 486 Hv_44K_v2
CAAAAGAGGAAAGGCTTGCGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGCA
AGCGACGAAATGCTTCGGGGAGTTGAAAATAAGCATAGATCCGGAGATTCCCAAATAGGT
CAACCTTTTAAACTGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAA
ACATCTCATGTTTGCTTGAAAGAGGGATCTATTACGATACCGCCATTTGCGCCACCACAG
AAAATGCAGGCTCACTTGATTCCTCCTGATACTCCCCGTTCAATATTCGTTTACTTCAGA
GGTTTGTTCTATGATAATGGGAACGACCCTGAGGGTGGGTATTATGCAAGAGGTGCTCGA
GCTTCATTGTGGGAGAACTTCAAGAACAATCCTCTCTTTGATATCTCCACCGAACACCCT
GCCACCTACTATGAAGATATGNCACGTGCCGTCTTCTGCTTATGCCCGTTGGGGTGGGCA
CCATGG

Homology of Contig U35_31652 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g32110.1	435	1e-69	protein\|exostosin family domain containing protein, expressed
Brachypodium v1_2	Bradi3g44420.1	429	1e-69
Arabidopsis v10	AT1G27440.1	412	2e-64	\| Symbols: GUT2, IRX10, ATGUT1 \| Exostosin family protein \| chr1:9529265-9531213 REVERSE LENGTH=412