barSeed - Barley Seed Development Database

Probe CUST_36634_PI390587928

Source Contig U35_31653

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36634_PI390587928	Hv_44K_v2	TGGCCGGGTCGGCGCACGACGCGCCCGTCCTCCCCACCGACGGTCTCCCCGAGGACTTCG	366	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_79498.2	1579	7e-23	895 - 954	98	59 / 60	minus	ABC02401 ABC02402 ABC02403 ABC02404 ABC46335
JLOC1	JLOC1_52948.1	1497	4e-23	544 - 603	98	59 / 60	plus
Harvest21	ABC02402	1458	1e-23	407 - 466	98	59 / 60	plus	ABC02402
Harvest35	U35_31653	426	3e-25	367 - 426	100	60 / 60	plus
Harvest35	U35_14753	1606	1e-23	421 - 480	98	59 / 60	plus

Contig Sequence (426 bp)

>U35_31653 426 Hv_44K_v2
GTAACCCACCCGAAGAAGCAACCAAGAAAATCCCCCCAATGGATCATCGCCTCGTGGCCC
CTCTCCTCCTCCTCGTCGGCCTCCTCCTCTCCCCGGCGCCGGCGACGGCGGCCGCGGGGG
ACGAGGAGCCCCTGATCCGGCAGTTCGTCGGCTTCGTGCAGCGGTTCGGGAAGACGTACC
GGGACGCGGAGGAGCACGCGCACCGGCTCTCCGTGTTCTAGGCCAACCTCCGCCGCGCGC
GCCGGCACCAGCTGCTCGACCCGTCCGCCGAGCACGGGGTCATCAAGTTCTCCGACCTCA
CCCCGGCCGAGTTCCGCCGGACCTACCTGGGGCTCAAGACGACCCGGCGATCCTTCCTGC
GGGAGATGGCCGGGTCGGCGCACGACGCGCCCGTCCTCCCCACCGACGGTCTCCCCGAGG
ACTTCG

Homology of Contig U35_31653 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g27030.1	374	1e-51	protein\|cysteine proteinase 1 precursor, putative, expressed
Brachypodium v1_2	Bradi3g43290.1	378	2e-56
Arabidopsis v10	None