barSeed - Barley Seed Development Database

Probe CUST_3662_PI390587928

Source Contig U35_30418

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3662_PI390587928	Hv_44K_v2	CACGCGTTTCAAAATAATTAAGGGGATCTGCGATGGTTTACTTTTTCTTCATAGAATTCC	515	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_77067.3	1178	2e-24	650 - 709	100	60 / 60	minus	None
MLOC	MLOC_77067.2	1462	2e-24	934 - 993	100	60 / 60	minus	None
MLOC	MLOC_77067.1	1692	2e-24	1162 - 1221	100	60 / 60	minus	None
JLOC1	JLOC1_51401.2	1471	8e-25	471 - 530	100	60 / 60	plus
JLOC1	JLOC1_51401.1	1106	8e-25	457 - 516	100	60 / 60	plus
Harvest21	ABC30331	594	3e-25	516 - 575	100	60 / 60	plus
Harvest35	U35_30418	594	3e-25	516 - 575	100	60 / 60	plus

Contig Sequence (594 bp)

>U35_30418 594 Hv_44K_v2
CACAAGCCTCATCCCCATTTCGTTGTTCCCTTCCCAGCATCCACCCCAAGTGTTGGATCT
TCTCCAGAAATGGCCACCTACGTTGGAGGAGTCAATACCGAGGAGAACAGTCACACTGTT
CTAAGCACATTACCCAAGGAGCTGCCGTTAGACTTTTTGAGGACTATCACAGATCAGTTC
GCAGACAAGTGTATTCTTGGTACAGGTGCATTTGGAACGGTTTATACGGGAGTTATGCCA
GATAACCAAAGGATTGCTGTGAAGAAACTTGCGGAGAGTGCGCCGGTTGCACGCGACAAA
GCATTTACCAATGAGGTTCAAAATATCATGGCTCTCCGCCATAAGAATGTGGTAAAGTTG
GTTGGGTACTGCCATGAAGGACAAAAGAAAGTTGTTCAAAACAATGGAAGATATATTGTT
GCAGATGTTTATGAAAGTCTACTCTGCTATGAATATTTACCTGTGGGAAGCCTTCAGAAG
AACCTCTTTGACAAACCCATCAACATGGCTTGGGACACGCGTTTCAAAATAATTAAGGGG
ATCTGCGATGGTTTACTTTTTCTTCATAGAATTCCTATTATCCATATGGATTTG

Homology of Contig U35_30418 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g21990.3	272	3e-92
Arabidopsis v10	None