barSeed - Barley Seed Development Database

Probe CUST_3661_PI390587928

Source Contig U35_16125

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3661_PI390587928	Hv_44K_v2	CACTTTTAAAGAGTATTGTATCTGTATGAAGGATTGACGGATTTGGCCACCTGTAAAAAA	1991	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_27455.1	1188	3e-22	726 - 781	100	56 / 56	plus	ABC04805
JLOC1	JLOC1_18534.1	1113	1e-22	722 - 777	100	56 / 56	plus
Harvest21	ABC04805	2111	5e-23	1992 - 2047	100	56 / 56	plus	ABC04805
Harvest35	U35_16125	2110	3e-25	1992 - 2051	100	60 / 60	plus

Contig Sequence (2110 bp)

>U35_16125 2110 Hv_44K_v2
CGCCGCCGCCGCCGCCCTGACCGGCTCCGGCGCCATGGCCGCCGCCGGAGAGCGGCGCCT
CCTCGTGGGCCTCCTCCTCCTGGCCCTGATGGTCTCCGCGCACTGCCTGGACGGCGGGGG
CCACCACGGCCCGCGCCTGAAGCGGCGGCGCAAGAAGCGCGAGATCCACTCCCCCGTCAA
GACGGTGGTGGTGGTGGTCATGGAGAACCGCAGCTTCGACCACGTCCTCGGCTGGCTGCG
CGCCACCCGCCCCGACATCGACGGCCTCACCGGCAAGGAGTCGAACCGCCTCAACGCGTC
CGACCCGTCCTCCCCGGAGATCTTCGTCACCGACAACGCCGGCTACGTCGACTCCGACCC
CGGCCACGGCTTCGAGGACATCCGCGAGCAGATCTTCGGCTCCGCCGACACCTCCGCCGT
CCCGCCCCCGATGTCGGGCTTCGCGCAGAACGCGCGCGGCATGGGCCTCGGCATGGCGCA
GAACGTCATGAGCGGCTTCACGCCCGACTCGGTCCCCGTCTACGCCGCCCTCGCCGACGA
GTTCGCCGTCTTCGACCGCTGGTTCGCGTCCGTGCCCACCTCCACCCAGCCCAACCGGCT
CTTCGTCCACTCTGCCACCTCCCACGGGCTCACCTTCAACGCCCGCAAGGACCTCATCAA
CGGCTTCCCGCAGAAGACCATCTTCGACAGCCTCGAGGAGGACGGCCTCTCCTTCGGCAT
CTACTACCAGAACATCCCCGCCACGCTCTTCTACCAGAGCCTCCGCCGCCTCAAGCACCT
CGTCAAGTTCCACCAGTACAGCCTCCGGTTCAAGCTCGACGCCGCCAGGGGCAAGCTGCC
CAACTACGTCGTCATCGAGCAGAGGTACTTCGACTGCAAGGAGTTCCCGGCCAACGACGA
CCACCCCTCGCACGACGTCGCCAGGGGCCAGAGGTTCGTCAAGGAGGTCTACGAGACGCT
GCGGGCGAGCCCTCAGTGGAACGAGACGGCTCTCATCATCACCTATGATGAGCATGGTGG
CTTCTATGACCATGTCCCCACGCCCGTCACCACGCCCGTCGTTAAAGTGCCTCAGCCTGA
TGGGATTATTGGCCCTGACCCTTACTACTTCAAGTTTGACCGGCTTGGGGTGCGCGTGCC
CAGCTTCCTCATCTCGCCCTGGATTGAGAAGGGCACCGTGATCCATGAACCAAATGGTCC
GCAGGAATACTCACAATATGAGCATTCATCCATCCCTGCGACAGTGAAAAAGCTATTTAA
TTTACGTGCTAACTACCTCACAAAGAGGGATGCATGGGCTGGGACGTTTGAGGACTACCT
CAAAGTTCGAAAGACACCAAGAACTGATTGTCCAGAGAAACTCCCAGAGGTTACAAAGTC
TCTGCGACCATTCGGTGCTAATGAAGATAAATCTCTTTCCGAGTTTCAAGTGGAGTTGAT
TCAACTTGCCTCTCAGCTCAATGGTGACCATGTCCTCAACAGCTATCCGGATATTGGCAA
GACAATGAGTGTAGGGGAAGCAAATCGCTATGCAGAGGATGCTGTCTCCAGATTCCTGGA
AGCTGGAAGGATTGCTCTTAGGGCAGGTGCAAATGAATCTGCCCTGGTGACAATGAGGCC
CGCGCTCACCAGCAGAGCCGCAATGTCCACTGGCTTGTCATCTGAACTCTGATGGATTGT
TCTGTATCCTGCCAACGGAGTCTGCATCATGATTTGCTCTACATCAGCTGTTAGCATTTA
TGCAATGGATATTAGATCTTACACATGTTTTTTTTGTACATATACACCATGATACTTCGT
ATCTGAAGCTTACTTCAGCGGATCCTCATGGTTTACGCTGAGATATCAGCTCAGGAGTAT
CGCCCAACGACGTACCAGATGCATGCCAAATTCCACTTGTGGATAAGCTGTACAACCGGT
ATTTGTAATCCATAGTTGGGAAATTGTACCTATTCAGCTCTACTGTACCTGCCTGGAAAG
CAGTTGAACTGCACTTTTAAAGAGTATTGTATCTGTATGAAGGATTGACGGATTTGGCCA
CCTGTAAAAAAAAAAAAAAAACTCCTGAATCTGAGTTTCACTTCAGTTGTTTCCAAAAAA
AAAAAAAAAA

Homology of Contig U35_16125 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g61130.1	546	protein\|phosphoesterase family protein, putative, expressed
Brachypodium v1_2	Bradi1g03250.2	542
Arabidopsis v10	AT1G07230.1	533	\| Symbols: NPC1 \| non-specific phospholipase C1 \| chr1:2220509-2222778 REVERSE LENGTH=533