barSeed - Barley Seed Development Database

Probe CUST_36605_PI390587928

Source Contig U35_29346

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36605_PI390587928	Hv_44K_v2	TAGATAAAGCAAGCACCAAGTCCATACAACAAGTCCAGGTGCAGCATGGCGTACAAATGA	470	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.535	1.836	0.968	0.974	0.381	0.546
Raw	72.099	80.164	38.078	59.949	7.537	12.727

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51613.2	5695	7e-23	5552 - 5611	98	59 / 60	plus	ABC20795
JLOC1	JLOC1_32987.1	6030	4e-23	955 - 1014	98	59 / 60	minus
JLOC1	JLOC1_32986.2	4749	4e-23	3634 - 3693	98	59 / 60	plus
JLOC1	JLOC1_32986.1	5313	4e-23	4198 - 4257	98	59 / 60	plus
Harvest21	ABC28601	548	3e-25	471 - 530	100	60 / 60	plus
Harvest35	U35_29346	548	3e-25	471 - 530	100	60 / 60	plus

Contig Sequence (548 bp)

>U35_29346 548 Hv_44K_v2
CAAACCAGAAGATACTGAAATGGGTGGCGGCGAACAGAAAAATCAAGATGGTGAAATCGC
AAAGGCCCAAACTCAGGAAAACACTGAAATAACTGCCGAGGAGCATAAGCATCAGGAGGA
TGAGTTACCAAAGGCCATCACACCTGAAAGTGTTCTGATGGCTGAGCAAACCGAGCAGGA
ACACAAGCAACCGGTGTCTGAAGTTGCAAGCAGCGATATTCCAGGCGGCCCTGTAACCAT
CCCGGTCTGCATGGCCACTGATGATGGGAATTCTAGCAATTCTCCAAAGAAGCCCGGACC
TGCCTAGGGATGCATTTGATGATTTATTTGATAGTGCAGCTGCAACTGAATTATCTTCTC
TTCTATAGTTTGTTTTGTCAATGTATTGTTGTTTTATTGTGAAAGGGAAGTGGTGCCACA
AGATTTATTGATCTGTAGAAATTCTTGAAATAGGTTTTGGCTATGCTTTATAGATAAAGC
AAGCACCAAGTCCATACAACAAGTCCAGGTGCAGCATGGCGTACAAATGAACCATGGTGT
CTGTTTAT

Homology of Contig U35_29346 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None