barSeed - Barley Seed Development Database

Probe CUST_36595_PI390587928

Source Contig U35_17371

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36595_PI390587928	Hv_44K_v2	CGACAGCTTGTTTTCTCAGTTCTCACAGCATATTAATATCGTGAAGATATCGTGTAAAAA	1119	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.994	1.773	1.112	0.808	0.340	0.453
Raw	342.378	461.408	266.627	305.644	43.483	65.117

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_17371	1191	3e-25	1120 - 1179	100	60 / 60	plus

Contig Sequence (1191 bp)

>U35_17371 1191 Hv_44K_v2
GCCTCCGCGCCCAGGGTCGCCGCCGCCTGCTGCGCTCCCTGCCCGATTTCACCGCTACCG
GCACTCGCAATGGCGGCATACGGCACCGGCGCTTGCGCGGACAGGAGGCTCCTCTTCAGG
CAGCTGTTCGAGAAGGAGAGCTCCACCTACACCTCCCTCCTCGCTGACGTTGGCGACCCC
GAGAAACCCGCCGTGTTGATTGACCCTGTTGACAGAACAGTTGATAGAGATCTCAACCTT
ATCAAGGAATTAGGCTTGAAACTCATCTATGCGATGAATACTCATGTGCATGCTGATCAC
GTCACTGGAACAGGACTAATAAAAACTAAGCTACCAGGAGCCAAGTCTGTTATTTCAAAA
GCTAGTGGAGCAAAAGCCGACCATTCTGTTGAGCACGGGGACAAAATATACTTTGGGAAG
CTTTTCCTTGAGGTGCGAGCTACTCCTGGCCATACTGCTGGCTGTATGACTTATGTAACA
GGTGATAGTGATGGTCAACCCTCACCAAGGATGGCTTTCACTGGGGATGCCTTAATTATA
CGTGCATGCGGAAGGACAGACTTCCAGGGAGGAAGCTCCGATCAGCTGTACCAATCAGTG
CATTCACAGATTTTCACGTTGCCAAAGGATACCCTGCTTTATCCTGCTCATGACTACAAA
GGTTTCACGGTAACTACTGTTGAAGAGGAGGTTACTTATAATGCCCGACTATCAAAAGAT
AAGGAAACTTTCAAGACGATCATGGAAAATCTGAACCTGTCTTACCCAAAGATGATCGAC
GTTGCTGTACCCGCCAATATGGTTTGCGGTTTCCAGGATCCACCATCGAAGGTCTGAGCT
TGTTCCAGCTGAAGCAGCTTTGCAAGTGGCTGTTGTGAAATCAGGATCGGATCGAAAGGG
CTTGCGGCTGCGTTGTACATTAAATAGCTCGTTCGCTGCAACATTGGGAGGAAATAATTA
GTCATTGGCCGATGCGGCCTCTGGCCCTGTTTGACACTCACTACCGTCTGATCATTGATA
TGTCAACTTGAAGAAGGCAGTTTGCGTTTGCTTGTCCGTTCATCTCACCTCACCTCTTCA
ATGCAAATATCGTGCCACTTCACGAACAATAGCAAACTGCGACAGCTTGTTTTCTCAGTT
CTCACAGCATATTAATATCGTGAAGATATCGTGTAAAAAAAAAAAAAAAAG

Homology of Contig U35_17371 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g47690.1	306	2e-151	protein\|metallo-beta-lactamase family protein, putative, expressed
Brachypodium v1_2	Bradi2g46040.1	303	2e-165
Arabidopsis v10	AT1G53580.1	294	2e-133	\| Symbols: GLX2-3, ETHE1, GLY3 \| glyoxalase II 3 \| chr1:19991542-19993250 REVERSE LENGTH=294