- Probe CUST_36594_PI390587928
- Source Contig U35_17372
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_36594_PI390587928 | Hv_44K_v2 | ATTCTGTTGAGCACGGGGACAAAATATACTTTGGGAAGCTTTTCCTTGAGGTGCGAGCTA | 736 | GeneList: lightcyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.928 | 1.142 | 1.871 | 1.518 | 0.639 | 0.832 |
| Raw | 76.634 | 143.447 | 211.200 | 270.088 | 40.854 | 57.787 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_75255.5 | 1349 | 2e-24 | 1 - 60 | 100 | 60 / 60 | plus | ABC07607 ABC47284 |
| MLOC | MLOC_75255.4 | 689 | 2e-24 | 199 - 258 | 100 | 60 / 60 | plus | ABC07607 |
| MLOC | MLOC_75255.2 | 1135 | 2e-24 | 401 - 460 | 100 | 60 / 60 | plus | ABC07607 ABC47284 |
| MLOC | MLOC_75255.3 | 1037 | 2e-24 | 380 - 439 | 100 | 60 / 60 | plus | ABC07607 ABC47284 |
| MLOC | AK374057 | 1526 | 7e-23 | 773 - 832 | 98 | 59 / 60 | plus | ABC07607 ABC47284 |
| JLOC1 | JLOC1_50195.1 | 1305 | 8e-25 | 419 - 478 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC47283 | 628 | 3e-25 | 479 - 538 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC34387 | 595 | 3e-25 | 391 - 450 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC07607 | 1432 | 3e-25 | 737 - 796 | 100 | 60 / 60 | plus | ABC07607 |
| Harvest35 | U35_46763 | 628 | 3e-25 | 479 - 538 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_17372 | 854 | 3e-25 | 737 - 796 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_17371 | 1191 | 3e-25 | 383 - 442 | 100 | 60 / 60 | plus |
Contig Sequence (854 bp)
>U35_17372 854 Hv_44K_v2 CTCCACCTCCGCAACCCCATCATCCGTCCTCCCATCCCTACCGCCACCGGCTACCTAGCG GGCACCTCGTCGCCGATCTCTTCACGCCATCGCGCCCATCGCCTCGCCGCGACTTCTTTA TATATTATATATATAAAAAATCCATAGAAGCCCTCGCCGAACCACCGCGAGGTCCACGCC GCGGGCGACGCCGTCCAAACCCGCGCGATAAGAACCAAGCCAGCCTTGCGTTGCCGCCGT TTCTCCCATCCACTCCCGCACCATCGCCGTTTCCCTATATAATACACCACCCAAATGGTG CCGCTCCGCTTATACCGCCACCTGATCCCGCAGCTGGCAGCTGCAGCCAGGTCGCCCTCA GCGCCCAAGGTCGCCGCCGCCTGCTGCGCTCCACGCCCGATCTCCCCGCCGCCGGCCCTC GCAATGGCGGCGTACGGCACCGGCGCTTGCGCGGACAGGAGGCTCCTCTTCAGGCAGCTG TTCGAGAAGGAGAGCTCCACCTACACCTACCTCCTCGCCGACGTCGGAGACCCCGAGAAG CCCGCCGTGTTGATTGACCCTGTTGACAGAACAGTTGATAGAGATCTCAACCTTATCAAG GAATTAGGCTTGAAACTCATCTATGCGATGAATACTCATGTGCATGCTGATCACGTCACT GGAACAGGACTAATAAAAACTAAGCTACCAGGAGCCAAGTCTGTTATTTCAAAAGCTAGT GGAGCAAAAGCCGACCATTCTGTTGAGCACGGGGACAAAATATACTTTGGGAAGCTTTTC CTTGAGGTGCGAGCTACTCCTGGCCATACTGCTGGCTGTATGACTTATGTAACAGGTGAT AGTGATGGTCAACC
Homology of Contig U35_17372 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g47690.2 | 281 | 9e-90 | protein|metallo-beta-lactamase family protein, putative, expressed |
| Brachypodium v1_2 | Bradi2g46040.1 | 303 | 4e-109 | |
| Arabidopsis v10 | AT1G53580.1 | 294 | 5e-70 | | Symbols: GLX2-3, ETHE1, GLY3 | glyoxalase II 3 | chr1:19991542-19993250 REVERSE LENGTH=294 |