barSeed - Barley Seed Development Database

Probe CUST_36591_PI390587928

Source Contig U35_17375

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36591_PI390587928	Hv_44K_v2	CCTTGAGATATTTGATTCAGATTTTTGGTCTGGCTCAAAGATCGAGGCTGGGCAGACAAG	2948	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.888	1.668	1.337	0.872	0.346	0.372
Raw	134.832	191.947	129.974	133.218	18.583	21.619

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_39480.1	3614	8e-25	3525 - 3584	100	60 / 60	plus
Harvest21	ABC08053	3072	3e-25	2949 - 3008	100	60 / 60	plus	ABC08053
Harvest35	U35_17375	3072	3e-25	2949 - 3008	100	60 / 60	plus

Contig Sequence (3072 bp)

>U35_17375 3072 Hv_44K_v2
GATTGCATCCATCAGCAATGATAACCCTGCACTGATATCCTGTGTTGATGATGAACGGCT
TGAGTTCCAAGATGGTGATCTTGTTGTTTTCTCTGAGGTCCATGGTATGACAGAACTGAA
TGATGGAAAACCAAGGAAGGTTAAAAATGCAAGGCCGTTTTCATTTAGCATCGAGGAGGA
CACAAGTAACTTTGGCACTTACGTAAAAGGTGGAATTGTCACACAGGTGAAAGAACCAAA
GGTGCTATGTTTCAAGGCACTAAGAGATGCCATGACAGATCCTGGAGATTTTCTTCTGAG
TGACTTCTCAAAGTTTGAGCGCCCCCCTGTGCTTCACCTGGCATTTCAAGCTCTGGACAA
ATTTAAGAAAGACCATGGACGCTGCCCTGCTGCTGGTTGTGAGCAGGATGCTCAAAGTTT
TCTGAAGATTGCTGCTGCTATTAATGAAACTTCAGCTGATCGCAAGCTGGACACTATTGA
TGAGAAACTATTCCAACAGTTTGCAAGTGGTTCTCGAGCTGTTTTGAACCCTATGGCTGC
GATGTTTGGTGGTATTGTTGGTCAAGAAGTTGTGAAGGCTTGTTCAGGGAAGTTCCATCC
TCTCAACCAGTTCTTCTACTTTGACTCTGTTGAATCCCTGCCAACATATCCGTTGGAACC
CCAAGACTTGAAGCCATCAAACAGCCGCTATGATGCTCAGGTCTCTGTGTTTGGTTCCAA
GCTTCAGAAGAAAATGGAGGAGGCTAATACTTTTGTTGTAGGGTCTGGTGCTCTTGGATG
TGAATTCCTGAAAAATCTTGCGTTAATGGGAGTGTCTTGTAGCAGCAAGGGAAAGTTAAC
CATAACAGATGATGATATCATTGAGAAAAGTAATTTAAGCCGTCAATTCTTGTTCCGTGA
CTGGAATATTGGACAGGCAAAGTCTACCGTGGCTGCTACAGCCGCCAGTGCTATCAACCC
CAGCCTTCACATTGATGCTCTCCAGAACCGTGCCTGTCCAGATACCGAGAATGTCTTCCA
TGACACATTCTGGGAGGGCCTAGATGTTGTCATCAATGCACTTGATAATGTCAATGCCAG
GATGTATATGGACATGAGGTGCCTGTACTTCCAGAAGCCACTACTGGAGTCAGGTACATT
GGGTGCAAAGTGCAATACTCAAATGGTGATTCCTCACCTTACTGAAAACTATGGGGCTTC
AAGAGATCCTCCTGAGAAGCAGGCACCTATGTGCACAGTCCATTCGTTTCCACACAACAT
TGATCACTGCTTGACATGGGCTCGTTCAGAGTTTGAGGGTTTGCTGGAGAAAACGCCAAA
TGAAGTGAACTCTTTTCTGTCTAACCCTGCTCAATATGCTGCTGCAATGAGGAAGGCAGG
TGATGCTCAAGCAAGAGAATTGCTTGAACGTGTCTCTGAGTGTCTTAACAAGGACCGGTG
CAGTACATTTGATGATTGCATAAGCTGGGCCCGACTGAAATTTGAGGATTATTTCTCTAA
CCGCGTGAAGCAGCTCACATTCACTTTTCCTGAAGATGCTGCCACTAGTATGGGTGCTTC
TTTTTGGTCTGCCCCCAAGCGCTTCCCCCGTGCACTGCAGTTTTCAGCTGCTGATCAGTC
TCACCTTAACTTCATTATGTCTGCTTCGATATTGAGAGCGGAGTCATTTGGGGTTGCTAT
ACCTGAATGGGCAAAGGATACTAGTAAGCTGGCTGATGTAGTAAAGAAGATTGCAGTTCC
TACATTCGAGCCAAAGCAGGGGGTTAATATTGTGACAGATGAGAAGGCATCGAATCTTTC
CAGCACCTCAGTTGACGATGTCGCTGTTATTGAAGATCTTCTGGCTAAGTTGCAAGAATA
TGCCAAGAGGCTACCTCCAGGATTCCAAATGAAACCTATCCAATTTGAGAAGGATGACGA
CACCAACTTTCACATGGATCTAATATCCGGGCTAGCAAACATGCGTGCAAGGAACTACAG
CATCCCAGAAGTCGACAAGCTGAAGGCCAAGTTCATCGCAGGCAGGATCATCCCAGCCAT
CGCAACCTCAACCGCAATGGCCACAGGGCTCGTGTGCCTCGAGCTGTACAAGGTCATCGC
CGGTGAGCACCCCGTCGAGGACTACCGCAACACATTCGCGAACCTGGCCCTGCCCCTCTT
CTCGATGGCCGAGCCAGTTCCACCGAAGGTCATGAAGCACAAGGAGACGAGCTGGACCGT
GTGGGACCGGTGGTCCGTCAAGGGCAACCTCACCCTGGCTGAGCTCCTGCAGTGGTTCGC
CGACAAGGGCCTCACCGCCTACAGCATCTCCTGCGGCACCTCCCTGCTGTACAACAACAT
GTTTGCGAGGCACAAGGACAGGCTGACCAAGAAGGTGATCGACATCGCCAAAGAGGTGGC
CAAGGTGGACGTCCCCGAGTACCGGAGGCACCTGGACATCGGCGTGGCCTGCGAGGACGA
GGACGAGAACGACGTCGATATCCCTCTCGTCTCGGTTTACTTCCGCTAGTCGGTCCTCGA
GATAAAACCTTCTGCATCATCCCCAGGCCTGCTCTTCTCCAAAACTAGCAAGATAAAAAA
CCTTGCATCATCATCCTCGGGCCTGCTCTCAAAGACTAGCTTTGCTGAATCCCTGATGTA
GTCAAGCCGCCGCTCTCGCGCTGATCGATCTATCATATCATGGTTACCTCAAGATGTTCT
CTCCTTGTGGTACACTGGTCCTGCAGCTATTTGCTCGTTGGTCGCATTCAGATAGTTGGG
AGGAATGAACAAAGGACACATCGGTTACGGTTAATCGACAGGTTACCAACAGACACATTT
GGTAGTACCATCTTTATGGCGCATTACCATCTCTCCTCCGGTTATCCAGTGAGCTCGCCC
AGTCTTCTGGCTGAATCTGTGACGTTTTTCCATCAGGATATTTTTCTCCGTAGATGTTTG
CAGTTGCACCTTGAGATATTTGATTCAGATTTTTGGTCTGGCTCAAAGATCGAGGCTGGG
CAGACAAGTGCCGGATCACGAACGCGGTTTAGCTGCTGATGCAGGAGTCATGACTGCATA
TGCACCATGTCA

Homology of Contig U35_17375 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os07g49230.1	1059	protein\|ubiquitin-activating enzyme, putative, expressed
Brachypodium v1_2	Bradi1g16680.1	1051
Arabidopsis v10	AT2G30110.1	1080	\| Symbols: ATUBA1, MOS5, UBA1 \| ubiquitin-activating enzyme 1 \| chr2:12852632-12857369 REVERSE LENGTH=1080