barSeed - Barley Seed Development Database

Probe CUST_36588_PI390587928

Source Contig U35_17377

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36588_PI390587928	Hv_44K_v2	TTTATGTGCATGGACCTGTCGGATTCGGAACGAAGCTAAGTTATAAGATATGGCTTTCCT	803	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10647.1	1383	2e-24	1172 - 1231	100	60 / 60	plus	ABC07364
JLOC1	JLOC1_6982.1	1437	8e-25	1169 - 1228	100	60 / 60	plus
Harvest21	ABC07364	883	3e-25	804 - 863	100	60 / 60	plus	ABC07364
Harvest35	U35_17377	886	3e-25	804 - 863	100	60 / 60	plus

Contig Sequence (886 bp)

>U35_17377 886 Hv_44K_v2
TGGCAGAACCGGGGGTCCAACCCCGACCGCTCCCTCATCCTCGCCTTCCGCACCATCGCA
AACATGGCAGACAGGCTGGGTCTTGTGGCTACTATTAAGGACCGAGCCAATGAAATCTAT
AAGAAGGTGGAAGATCTCAAGTCTATCAGGGGTAGAAATCAAGATGCTATATTAGCTGCT
TGTCTTTATATTGCTTGTAGACAAGAAGATCGTCCTAGGACTGTAAAAGAAATTTGCTCA
GTTGCCAATGGAGCAACAAAGAAAGAGATTGGTCGAGCAAAAGAGTTCATCGTGAAACAG
CTGGAAGTTGAAATGGGCCAATCTATGGAGATGGGAACCATCCATGCTGGAGATTTCCTG
AGGCGTTTCTGCTCAACTCTTGGTATGAACAATACTGCTGTTAAAGCAGCTCAGGAGGCA
GTTCAGCGCTCAGAGGAGCTTGATATAAGGAGGAGCCCTATTTCAATTGCGGCTGCTGTC
ATTTATATGATAACCCAGCTTTCAGAGGACAAAAAGCCGCTTAAAGATATCTCCTTGGCC
ACCGGAGTGGCAGAAGGCACCATCAGGAATTCGTACAAGGACCTGTACCCCTACGCTGCG
AGGCTCATCCCGAACTCGTACGCCAAGGAGGAAGACCTGAAGAACCTGTGCACACCATAG
GAGCCGAGTCGCAGCCATTTCTTCGTTTCTCTCGCTCTCTCGCTCTTTCTTCCTTCCTTT
TCTTCTCACATAACTTTTGAAATTAGATTTGTCGGAGAGTTGTTGTGAGCACTTGACCGG
GCCATGTATATCCCCCGCCTAATTTTATGTGCATGGACCTGTCGGATTCGGAACGAAGCT
AAGTTATAAGATATGGCTTTCCTTTCAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_17377 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g36440.1	313	1e-148	protein\|transcription initiation factor IIB, putative, expressed
Brachypodium v1_2	Bradi4g36290.1	313	2e-150
Arabidopsis v10	AT3G10330.1	312	2e-126	Cyclin-like family protein \| chr3:3199907-3201642 FORWARD LENGTH=312