barSeed - Barley Seed Development Database

Probe CUST_36573_PI390587928

Source Contig U35_29355

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36573_PI390587928	Hv_44K_v2	TTTCAAGAAGAAGCATTGCCCCGATGCCGCGGCAGCCCGGAAACGGTTCATCCGTTCGGG	33	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60544.1	1392	7e-23	176 - 235	98	59 / 60	plus	None
MLOC	MLOC_60545.1	5240	7e-23	177 - 236	98	59 / 60	plus	None
MLOC	MLOC_60545.2	4468	7e-23	177 - 236	98	59 / 60	plus	None
JLOC1	JLOC1_39488.3	5388	4e-23	5123 - 5182	98	59 / 60	minus
JLOC1	JLOC1_39488.2	4555	4e-23	4290 - 4349	98	59 / 60	minus
JLOC1	JLOC1_39488.1	3871	4e-23	3606 - 3665	98	59 / 60	minus
Harvest21	ABC28614	350	3e-25	34 - 93	100	60 / 60	plus
Harvest35	U35_29355	350	3e-25	34 - 93	100	60 / 60	plus

Contig Sequence (350 bp)

>U35_29355 350 Hv_44K_v2
GGAGAGGAAGCTCCGGCCCGGGAGGAGCGCCACTTTCAAGAAGAAGCATTGCCCCGATGC
CGCGGCAGCCCGGAAACGGTTCATCCGTTCGGGCACCTCGCTCACCGCGTCCTCGTCGGC
GCGAGCGAGCTTCGGACGCCACTCCGTGGACGTGGCCAACTACAACCACAGCATCGTCTC
GGCGCGCTCCTTCACCTTCCGTGAGCTCGGCGCCGCCACGGACAGCTTCAGCCAGGCCAA
CCTCATCGGCGAGGGCGGCTTCCGCCGAGTCTACAGAGGCCTCATCGGGTCGTCGGCGGT
GGCCGTCAAGCAGCTCGACCGCACGGGGTTCCAGGGCGACCACGAGTTCC

Homology of Contig U35_29355 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None