barSeed - Barley Seed Development Database

Probe CUST_3656_PI390587928

Source Contig U35_16127

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3656_PI390587928	Hv_44K_v2	CAGGAGTTATCCACTAGAATATCTATCAGAGCACTCAACAAATAATGGAGAAAGATTTTG	1765	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.573	1.644	1.162	0.798	0.477	0.510
Raw	1326.187	2153.365	1335.733	1407.109	301.534	355.382

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC04602	1855	3e-25	1766 - 1825	100	60 / 60	plus	ABC04602
Harvest35	U35_16127	1855	3e-25	1766 - 1825	100	60 / 60	plus

Contig Sequence (1855 bp)

>U35_16127 1855 Hv_44K_v2
GGCTGCAGGAATTCGGCTCGAGGATTGCTTTCTCCTTCTCCAAGTAAACTCAGTTTCCAC
CGCTCCGCCGCGCCGCCGATTCGCCAGCCATGCTGACGGTATGCATAAAATGGCAGAAGC
AGGTCTTTCCAGGCATAGAGATTGATACTAGCCAGCCGCCTGTGGTTTTCAAGACCCAGT
TGTACACACTGACTGGTGTACCCCCTGAACGGCAAAAAATTATGGTGAAGGGTGGAATAT
TGAAGGATGACACAGATTGGTCTACTTTGGGACTCAAAGATGGTCAAAAGTTGATGATGA
TAGGCACGGCTGATGAAATTGTGAAAGCTCCAGAGAACGGCCCCGTGTTTGTTGAAGATT
TACCAGAAGAAGAGCAAGCGGCTGCACTGGGGCACAGTGCTGGTCTCTATAATCTGGGGA
ATACATGTTACATGAATTCCACCCTGCAGTGTCTGCATTCTGTTCCAGAGCTCAAGTCAG
CACTACTGAGTTATTCAGATAATGCGAGGGGCAATGGGGTGGATCAAGCATCCCATACTT
TGACAGTTGCAACTCGTAATACTTTTGGAGAGCTTGATCAAAGCATCCGACCAGTTGCAC
CTCTGCACTTCTTACAGATGCTGCGGAAGAAATACCCCCAATTTGCTCAACAGCAAAATA
ATGTTTACATGCAGCAGGACGCAGAGGAGTGCTGGACACAGCTGGTCTATACGCTTTCTC
AAACCCTTACATCAGAAGCAAGTGAACCTACTGCTGGTCAGATGAAGGAACTTTTCGGGA
TTGATCTTGTGAGCAGGGTACACTGTGCAGAAAGTGGTGAGGAGAGTTCAGAGGCAGAGT
CGGTTTTTTCTCTGAAGTGCCATATATCTCATGAGGTAAACCACCTTCATGAAGGACTGA
AGCATGGTTTGAAGACAGAACTTGAGAAGGTCTCCCCATCACTGGGCCGGACTGCTATTT
ACACAAGAGAGTCGAGAATAAATGAGTTGCCTAGGTACTTGACTGTGCAGTTTGTTCGTT
TCTTTTGGAAAAGGGAGTCAAACCAGAAGGCAAAGATTTTACGTAAAGTGGATTACCCTC
TGGAGCTTGATGTCTATGACTTCTGCTCGGATGAGCTGAAACTAAAACTTCAAACTCCTC
GACAGGTGCTGAGAGATGCAGAAAGTGCCAAGTTTGGTTTGAAAGTACAGGTGAAAACAA
GCAGCTCACAAAATATTGAGGGGTCATCAACTAGTGCCGGGGAATCATCTAGCATGGACA
TTGACAAAGCAGCTGATTCTTCTGTGCCAAAGAAACAATTAACTGGGATCTATGATTTAA
TTGCTGTCTTGACACACAAGGGAAGAAGTGCAGATTCTGGTCACTACGTTGGCTGGGTTA
AGCAAGATGATGGTCAGATCAGCTAGTCCTACACATAATCAGATACTCTCTGGCCTTGCA
ATATATTGATAATTTCTTGTTGCCATTCAGGAAAATGGATTGAGTTTGATGACGACAACC
CAAGCATACGAAAGGAGGAAGAGATTTTGAAATTATCTGGTGGAGGCGACTGGCACATGG
CTTATATCTGCCTTTATAAAGCTCGTGTTATCTAAACCTGAGTCGATAGGTTATCAGCCA
AATATGCCGTTATATTTCTGAAGTTGTGTGCACACCTTGCCTGTTTTATCCACCACATGA
GTGGATGTATTAAAGTATTAAGAATTTTCCAGTTTGGTTCAAACTGTGAGTGAAGTGATC
AGTGTCCATTCCGATGTTACTTATTCAGGAGTTATCCACTAGAATATCTATCAGAGCACT
CAACAAATAATGGAGAAAGATTTTGTTTATTTTTTATTTAAACATCATTTATTTT

Homology of Contig U35_16127 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g36930.1	475	protein\|ubiquitin carboxyl-terminal hydrolase 6, putative, expressed
Brachypodium v1_2	Bradi2g40820.1	474
Arabidopsis v10	AT3G21280.1	532	\| Symbols: UBP7 \| ubiquitin-specific protease 7 \| chr3:7478166-7482037 REVERSE LENGTH=532