barSeed - Barley Seed Development Database

Probe CUST_36562_PI390587928

Source Contig U35_31676

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36562_PI390587928	Hv_44K_v2	CCTCTCGGCCACGGCCGCCGCCACAACAACCGACACGGTCGGCCGCGCGTGCGCCCGATT	191	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358188	1150	3e-22	172 - 230	98	59 / 60	plus	None
MLOC	MLOC_71684.1	521	3e-22	31 - 89	98	59 / 60	plus	None
JLOC1	JLOC1_47659.1	352	1e-22	21 - 79	98	59 / 60	plus
Harvest35	U35_31676	251	3e-25	192 - 251	100	60 / 60	plus

Contig Sequence (251 bp)

>U35_31676 251 Hv_44K_v2
AGTGACCACCACGCCACCGGTGGGTAATCGCCGAACCCCGCTGCTCCCATGGAAACCGCC
GCGGCGCCCCGCGTCCAGGCGCTCGCCGACGCCGGCTTGCCCCGCCTCCCGGCGCAGTAC
ATCCAGCCGCCCGACCTCCGCGCGGGCCCCTCCCCCTGCCCCTCCGCCTCCCTCTCCGTC
CCCGTTGTTGACCTCTCGGCCACGGCCGCCGCCACAACAACCGACACGGTCGGCCGCGCG
TGCGCCCGATT

Homology of Contig U35_31676 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None