barSeed - Barley Seed Development Database

Probe CUST_3655_PI390587928

Source Contig U35_16128

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3655_PI390587928	Hv_44K_v2	AACAAAAAGCGTATGGTTGTCATTTCGCCCTGTCGGCGATACTGTGAATTAACAGTTGCC	1634	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.649	1.795	1.069	0.879	0.481	0.541
Raw	375.861	655.889	331.270	432.589	83.136	100.211

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371521	1703	2e-24	1602 - 1661	100	60 / 60	plus	ABC00451 ABC04563
MLOC	AK370455	1820	2e-24	1755 - 1814	100	60 / 60	plus	ABC00451 ABC04563
MLOC	MLOC_10877.2	1222	2e-24	131 - 190	100	60 / 60	minus	ABC00451
MLOC	MLOC_10877.1	2357	2e-24	239 - 298	100	60 / 60	minus	ABC00451
JLOC1	JLOC1_7153.1	2423	8e-25	297 - 356	100	60 / 60	minus
Harvest21	ABC00451	1697	3e-25	1615 - 1674	100	60 / 60	plus	ABC00451
Harvest35	U35_16128	1717	3e-25	1635 - 1694	100	60 / 60	plus

Contig Sequence (1717 bp)

>U35_16128 1717 Hv_44K_v2
CCCATTTGTTGCCTGGCTGGCTCAGAAAGCGCGCAAGGAGAGGGAGAGATGGCGCTGGCT
ATCCTGGCGAGGCGGAGGGCGGCGGAGGCCGTGGCGCGGCGGGCGCACGCCCCCGGGGCG
GCGGCGCTGTCGGCGTGGAGGGCGTACGCGGCGGCGGCGGCGGCGGAGGAGAGCGACGTC
GTGGTGGTCGGCGGCGGCCCGGGCGGGTACGTGGCGGCCATCAAGGCGGCGCAGCTGGGG
CTCAAGACCACCTGCATCGAGAAGCGGGGCACCCTCGGCGGGACCTGCCTCAACGTCGGG
TGCATCCCCTCCAAGGCTCTGTTGCACTCTTCTCATATGTACCATGAAGCAAAGACTTCT
TTTGCGCACCATGGAGTGAAAATCTCTAACCTGGAAGTGGATCTCCCAGCCATGATGGCG
CAGAAAGACAAGGCTGTGGCCGGATTAACAAAAGGAATCGAAGGCCTCTTTAAGAAGAAC
AAAGTGACGTATGTCAAAGGCTTTGGGAAACTTACCTCCCCTTCAGAAGTATCGGTTGAT
TTGGTTGATGGTGGTAACACTGTTGTCAAAGGAAAAAACATAATCATTGCCACTGGATCT
GATGTAAAATCACTTCCTGGGATCACAATCGATGAGAAGAAGATTGTTTCATCTACTGGT
GCCCTGTGCTTGTCGGGTATCCCAAAGAAAATGGTTGTCATTGGAGCTGGTTACATTGGC
CTGGAAATGGGTTCAGTCTGGAATCGTCTTGGGACAGAGGTCACTGTGGTTGAATTTGCT
CCGGACATAGTCCCATCAATGGATGGTGAAATCAGGAAGCAGTTCCAACGCATGTTGCAG
AAGCAGAAAATGAAGTTTATGCTCAAGACAAAGGTGGTCGGAGTTGATACCTCTGGAGAC
GGGGTGAAGCTAACACTTGAGCCTGCAGCTGGAGGTGAGCAGAGCACCCTTGAAGCAGAC
ATCGTTCTTGTCTCTGCTGGGAGAACCCCTTATACCGCCGGGCTCGGGCTGGATGCCATT
GGGGTTGAGATGGACAAGGCTGGCAGGATCCTCGTCGATAAGAGATTCATGACCAATGTG
AATGGAGTGTATGCGATTGGTGATGCCATCCCTGGGCCCATGCTTGCCCACAAGGCTGAA
GAGGATGGTGTGGCATGTGTTGAGTTCCTCGCTGGCAAGGAAGGTCACGTCGACTACGAT
CTGGTGCCTGGTGTGGTCTACACACACCCAGAGGTGGCATCCGTTGGCAAGACGGAGGAG
CAGGTGAAGGCCTCAGGAATTCCCTACCGAGTTGGCAAATTCCCGCTCATGGCGAACAGC
CGTGCGAAGGCTATCGATGATGCCGAGGGGATGGTTAAGGTCGTGGCTGACAAGGAAACT
GACAAGATTCTTGGTGTGCACATAATGGCGCAGAATGCTGGAGAGATCATCCATGAAGCT
GTGCTTGCCCTGCAGTATGGAGCGTCGAGCGAGGATGTTGCCCGGATATGCCATGCTCAC
CCCACTGTGAGTGAAGCCCTCAAGGAGGCTTGCTTGCAAACCCATTCTAAAGCCATCCAC
ATATAATCTTTCCTTTTCTGTTATTACTTGTCTCAGCAAGTTCCAAAATTTTGTAATAAT
TTTGGATGTATGGGAACAAAAAGCGTATGGTTGTCATTTCGCCCTGTCGGCGATACTGTG
AATTAACAGTTGCCAGTGCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_16128 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g22520.1	504	protein\|dihydrolipoyl dehydrogenase 1, mitochondrial precursor, putative, expressed
Brachypodium v1_2	Bradi2g12310.1	504
Arabidopsis v10	AT1G48030.1	507	\| Symbols: mtLPD1 \| mitochondrial lipoamide dehydrogenase 1 \| chr1:17717432-17719141 REVERSE LENGTH=507