barSeed - Barley Seed Development Database

Probe CUST_36555_PI390587928

Source Contig U35_17388

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36555_PI390587928	Hv_44K_v2	TGTATGAAGGATGGCTTGTTTAGATCGTCTATTGTCATTTGTCTGTCTTTGTGGAAAAAA	2028	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.525	1.350	1.038	0.825	0.375	0.311
Raw	415.923	552.442	384.657	463.140	77.693	70.302

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73405.5	923	3e-21	861 - 917	98	56 / 57	plus	ABC08746
MLOC	MLOC_73405.4	2149	3e-21	2067 - 2123	98	56 / 57	plus	ABC08746
JLOC1	JLOC1_48872.1	2180	2e-21	2068 - 2124	98	56 / 57	plus
Harvest35	U35_17388	2100	3e-25	2029 - 2088	100	60 / 60	plus

Contig Sequence (2100 bp)

>U35_17388 2100 Hv_44K_v2
CTACTACTCTACTCGACAGAGATCCGATCTGACGGGGCCGAGGCGGCGCACCGGAACCCC
GGCGGGGCCGAGATGGGGGACTTCAACGTGGCGCTGGTGATCGTGGCGGCGGTGGTGAGC
GTCCTGGTGCTGCTCGTCAGCGTCTACCTTCTCGTCAACTACCAGCACCCCGACGACGCC
AACCAGGCCTACTTCCCCAAGCTCGTCGTCGTGCTCGGCATCACCGTCGCCGTCCTCTCA
ATCCTCATGCTCCCCGCCGACGTCGCCAACAGGCAGGCCTGCAAGCGGGCCGTCTACAGC
GGGGCCTGCTCCCTCACCCTCCCCATGAAGACGCTCTGGCTCGTCGTCTACATCATCGAC
GCCGTCCTCGTCTTCCTCGTCATACCGTTCGCCATGTTCTACTACGAGGGCGACCAGGAC
AAGTCCGTCGGGAAGCGGCTCAAGAGCGCCCTCATATGGGTCGTCGCCTCCGCCGTCGTC
TGCGGCCTCGTCCTCGGCATCCTATACGCACTTATTGGCAAAGTGGACTTCACTGTCAGG
CACCTCTCTTCATCTGTCCAGACATTTCCAGGCCCAAACCAGTTCGGTGCATTCACAAGT
GGCCAACCTTGCATCGCTCCATTGACCCGTCAGTGTTCAGCTAATACTGCACCTGCTAAC
TCTCAAACAACTTGGACAATGCGTGCTACATTCCCTGAATACGTGGTTGCCCTTGCTACC
ATTGTTGGATCTGTGCTCTTCACAATATTTGGTGGTGTTGGCATTGCTTGCCTTCCCTTG
AGTCTTATATTCTCGTTTGTCCGGCGTCCAAAAGCTGTCATCACACGCTCACAATATATA
AAGGAAGCAACTGAATTAGGTAAGAAGGCCAAGGAATTGAAGAAGGCAGCTGAAGCCCTT
CACCAAGAAGAGAGAAGTGGGAACAAAGGCAGAAAATGGCGCAAAAATGTGAAGGCTGTC
GAGAAGGAGTTGCTACTTTTGGAAAATGACATGAATGCCCTGGAAGAGATGTACCCTCAA
GGAGAGAAGGCTGAGGCTACCTGGGCTTTTACAGTGCTTGCTTACATTGGAAAACTCATA
TTCGGCATTGTTGGGTTAATTGTATCGATTGCTTGGGTTGCACATATTATCATATACTTG
TTGGTGGATCCCCCTCTATCTTCTTTCCTGAATGAGATCTTCATAAAGCTGGACAGTGTT
TGGGGTCTGCTTGGGACTGCTGCTTTTGCATTCTTCTGTTTCTATCTCCTCATCGCAGTC
ATTGCTGGGGAAATGATGCTTGGCCTGAAACTAGTTTTCATCACCATTCACCCAATGAAA
TGGGGAGGAACTTTGATGAATTCTTTCCTGTTTAATGTCGGATTGATCCTACTCTGTTCC
ATCAGTGTGATTCAGTTCTGCGCGACAGCTTTTGCGTACTACGCACAAGCGACTGCAGCC
CAGGAGATCTTTGGCCACACACTGCAGTCTCTTCGCGGAATCAAGTATCTCTACAAGTAC
AATGTTTTCCAATATGGATTTGTTGCTCTCGCCATACTCACACTCTTCTACTATGCACTT
TTTGGATGGCGAAAGAGGAAACCGACAGGAAGGTTCCAGCTCTCAAACTAATTTTCGGTT
TGCTCTGTAAGCAACGCCTGACAAATTCAACATCATATTTGTTCCCGAGTGATAGTTTGG
TTAGCGATGTATATGATCTTCAAACCGCTTTCTGGAAGAGTTGGGGCGTTTTCATGGGTG
TAAATTAGGCAACGAAAATCTTGGAAGATGGAAAACACCCACGGACACGGATGTTAAAGT
AGAAGAACCTAGTTTCCTTTGTAATGTACACATTCCTCATCTCGGTTCTTTTCTGTATTA
TTGTTTTATGATCATCAATCGGCTGATGTTATTATTGAAGTTTGATTGGTCTGTGAGAGA
GATGTTCTGTGTCCCCCTTTGTTGTTCCTTTGCCGTTACGAGTTAAATTAGTCCAGTTCT
TTTTCTTTTGTATGTACCATTCCGTGATTACCATTCAAACTTGTAGATTGTATGAAGGAT
GGCTTGTTTAGATCGTCTATTGTCATTTGTCTGTCTTTGTGGAAAAAAAAAAAAAAAAAA

Homology of Contig U35_17388 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g03760.2	511	protein\|LMBR1 integral membrane protein, putative, expressed
Brachypodium v1_2	Bradi1g49650.1	511
Arabidopsis v10	AT5G01460.1	509	LMBR1-like membrane protein \| chr5:186823-190008 FORWARD LENGTH=509