- Probe CUST_36550_PI390587928
- Source Contig U35_29360
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_36550_PI390587928 | Hv_44K_v2 | AAGTTAGGATTCATTCCAGCTTGCTGCAACCTTCAAGACCTAGAAGCTTCGGAAAGGCAT | 278 | GeneList: lightcyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.909 | 1.057 | 1.336 | 1.238 | 0.396 | 0.693 |
| Raw | 34.366 | 59.299 | 69.975 | 102.315 | 11.504 | 22.125 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK354850 | 1324 | 2e-24 | 1083 - 1142 | 100 | 60 / 60 | plus | None |
| Harvest21 | ABC28620 | 424 | 3e-25 | 279 - 338 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_29360 | 424 | 3e-25 | 279 - 338 | 100 | 60 / 60 | plus |
Contig Sequence (424 bp)
>U35_29360 424 Hv_44K_v2 CGCTCCTGTCTCACCTCGCCTCCCATCTCGCCGTCGTCGCCGGCCAAGCCGTCGTCGCCC CCGCCGGCCATCGCTCCTCAAGCGCAGGTCTGACTACGGCATGGCTACGGCCACACAGCA GCCGCGGCTGTAGGAGAGCGGCCAGCTCCGACATGTTCATCCGCCCGCTCTGGGACTCCA TCGTCAAGCACACCAACCTGAAGGTGATACCTCAACCTTTATATGCAAGTGCCAAAAGAT CTCAGACATCGAAGCTAGATATGATGCATCAAGTGAAGAAGTTAGGATTCATTCCAGCTT GCTGCAACCTTCAAGACCTAGAAGCTTCGGAAAGGCATGGGAGGAGCCACAGGGAGCCTA CACGACCAGGTGACGCACCACAGGCCTAAAGCGTGCCACCACAACGTGTGGGCCCACCTA CACC
Homology of Contig U35_29360 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |