- Probe CUST_36539_PI390587928
- Source Contig U35_43659
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_36539_PI390587928 | Hv_44K_v2 | TGTAGTTAATTGCGGCATGTGATGAGTGGTTATGATATTAACTACAATTTTAACTGCCCT | 19 | GeneList: blue MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 1.670 | 1.304 | 1.102 | 0.761 | 0.265 | 0.224 |
Raw | 1399.720 | 1677.568 | 1270.309 | 1376.738 | 170.535 | 157.597 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_73576.1 | 879 | 3e-22 | 821 - 876 | 100 | 56 / 56 | plus | ABC01368 ABC31626 ABC49927 |
JLOC1 | JLOC1_48988.1 | 1063 | 1e-22 | 886 - 941 | 100 | 56 / 56 | plus | |
Harvest35 | U35_43659 | 512 | 3e-25 | 20 - 79 | 100 | 60 / 60 | minus |
Contig Sequence (512 bp)
>U35_43659 512 Hv_44K_v2 TTTTTTTTTTTTTTTTGAAAGGGCAGTTAAAATTGTAGTTAATATCATAACCACTCATCA CATGCCGCAATTAACTACAATGCACACAGCTTCAAATCCAACGTAGGGGCCATTCGAGGA ATCAAGCAGGTGTTGAGAGCAGCAAACCAACACCCATAAGATACGATGAAAAATATTCCA AAACACAACCAGATCGAATCCATTAGAAGAGACTTTCACAAAGTATGAGCTAGCAGTATT TAGACGACAGATAACAGGGCAAAAATTCCACTCAGCCAAACCAGATGCTACAAAGTGCTC TAACGAATAGGTGGACAGATGATGTAGAGCTTCCTTCTCTAGGCCTTCCTGGCAATCTGG GACTCAGCCTCCTTCTTCACCGGCTCTTCCTTCTCAGACAAGATCAACTCAATGTGGCAT GGGTTGGACATGTAGGGGTTGATGCGTCCATGAGCACGGTAGGTCCTGCGCCGCTGCTTC TGGGCCTGGTTCACTTGGATGTGCGAAATGTA
Homology of Contig U35_43659 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |