barSeed - Barley Seed Development Database

Probe CUST_36530_PI390587928

Source Contig U35_17391

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36530_PI390587928	Hv_44K_v2	AAGCACTGGCTGTTGGGTTTCAAGTTGGATATTGGATTGTGAATTATTTCGTGGAAAAAA	1381	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.720	1.688	1.252	0.828	0.294	0.267
Raw	4385.550	6820.943	4334.950	4507.227	570.264	557.150

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_46294.1	1627	1e-22	1455 - 1510	100	56 / 56	plus
Harvest21	ABC07674	1452	3e-25	1382 - 1441	100	60 / 60	plus	ABC07674
Harvest35	U35_17391	1478	3e-25	1382 - 1441	100	60 / 60	plus

Contig Sequence (1478 bp)

>U35_17391 1478 Hv_44K_v2
CCCGGGCTGCAGGCTGCTCTGCAGCCCAAAACCTAACCATGGCGCGAGTCCGCAGCAACG
GGCGGCGTGGCGGCGGCAGTGGTGGTGGCGGCGGCGGCGGCAAGGGGAAAGGGAAGGGAA
AAGGCCCAGGCAAGTGGAAGATGCCGTTGTCGGTGGCGCGGAAGCAGCAGGCGGTGCTCG
CTAACGTCGACCAGGTCACCGGCGAGAGGATCCCCAAGAGCTTCGTCTTCTCGCGCGGCA
AGCTCCCCTCCACGCTCCGTCACCTCCAGCAGGACCTCCGCAAGCTCATGCTCCCCTACA
CCGCCCTCAAGCTCAAGGAGAAGAAGAGGAACAACCTCAAGGACTTCGTCAACGTTGCCA
GCCCATTGGGTGTTACGCATTTCCTGATCCTCTCGAACCCAAAGAGCTTACCGCACCTGC
GCTTCGCCAAGTCACCGCAGGGTCCAACCTACACTTGTCAGATTTTAGAGTACGCTCTTG
CAGCTGACATCGCAAACTCCCAAAAGCGGCCAAGGTGTCCTGCAGAGATATTCAAAAACT
CGCCTCTGGTCGTGCTAAGTGGTTTCAATGGCCTCGGCGAGCCTTTCAAGAGTTTTGTCA
CCTTCTTTCGACATTTGGTCCCTGCTATTGATACAGATACGGTTAAGCTATCAACATGTC
AAAGAATATTATTGCTACAGTGTGACAAAGAGACAGAGGTTATCGATTTCCGGCATTACT
CCATCAAGCTCCAGCCTGTTGGGGTGAGCCGCAAGATTAGAAAACTCATGCAGAACAATC
AAGTGCCAGACCTAAGGGACCTTAAAGATGTTAGTGATTATGTGACAAAAGCTGGATATG
GATCAGAAAGTGAACCAGACGATGAAGCAGCGACTGTAAGTCTAGCAAGTGATATAGATA
AATTGAACAGAGCATCCCGAAAAAGTGCTGTCAGGCTCCAAGAGATCGGACCAAGAATGA
CTATGCGCTTAGTTAAAGTTGAATCTGGGCTATGCTCGGGCGACGTCTTGTACCCACAAT
CTGTTGGAGAAGAAGATGTGAAGGAGGGACAAGAGGAAGAAGAGATAGAAGATGCTGAGG
ATATGATGGAGCTGGAGGATGTCTCGGGCGACGAAGAGTAGCCTAGATGAGCTTGAGAGG
TGCTGAGCAGCAGCCTATGATGATTGCCAAAAATGTGAAGCAGCTGCTGTATTGCGACAA
CATTATATGAGTTTAGTTGATCCTTAAGAAAGCATAGTACAAAGCTCGTTCCTGAAAAAG
AGAGGATAAGGCTCTTGCAGTGATAATCCTTGATGTGCCTCATTTTGGTTAAATCTTAAT
GGTTTTTAGCTCTGAAACAAGTTGTATTTACCTCAGTTTTGCCTTAGGAGGGTGTGCATA
TAAGCACTGGCTGTTGGGTTTCAAGTTGGATATTGGATTGTGAATTATTTCGTGGAAAAA
AAAAAAGATATTTCCCTTTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_17391 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g22350.1	361	6e-170	protein\|Brix domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g62800.1	363	0.0
Arabidopsis v10	AT5G61770.2	346	7e-114	\| Symbols: PPAN \| PETER PAN-like protein \| chr5:24815888-24817495 FORWARD LENGTH=346